Department of Chemistry, Indian Institute of Technology Kharagpur , Kharagpur-721302, India.
J Phys Chem B. 2012 Aug 30;116(34):10195-204. doi: 10.1021/jp304537m. Epub 2012 Aug 21.
Formation of ion pair between charged molecule and protein can lead to interesting biochemical phenomena. We report the evolution of thermodynamics of the binding of tartrazine, a negatively charged azo colorant, and serum albumins with salt. The dye binds predominantly electrostatically in low buffer strengths; however, on increasing salt concentration, affinity decreases considerably. The calculated thermodynamic parameters in high salt indicate manifestation of nonelectrostatic interactions, namely, van der Waals force and hydrogen bonding. Site-marker competitive binding studies and docking simulations indicate that the dye binds with HSA in the warfarin site and with BSA at the interface of warfarin and ibuprofen binding sites. The docked poses indicate nearby amino acid positive side chains, which are possibly responsible for electrostatic interaction. Using the Debye-Hückel interionic attraction theory for binding equilibria, it is shown that, for electrostatic binding the calculated free energy change increases linearly with square root of ionic strength. Also UV-vis, fluorescence, CD data indicate a decrease of interaction with salt concentration. This study quantitatively relates how ionic strength modulates the strength of the protein-ligand electrostatic interaction. The binding enthalpy and entropy have been found to compensate one another. The enthalpy-entropy compensation (EEC), general property of weak intermolecular interactions, has been discussed.
离子对在荷电分子和蛋白质之间的形成可能导致有趣的生化现象。我们报告了带负电荷偶氮染料柠檬黄与血清白蛋白在盐存在下结合的热力学演变。在低缓冲强度下,染料主要通过静电结合;然而,随着盐浓度的增加,亲和力会显著降低。在高盐下计算出的热力学参数表明,存在非静电相互作用,即范德华力和氢键。位点标记竞争结合研究和对接模拟表明,该染料与 HSA 在华法林结合位点结合,与 BSA 在华法林和布洛芬结合位点的界面结合。对接的构象表明附近的氨基酸正侧链可能负责静电相互作用。使用结合平衡的 Debye-Hückel 离子吸引理论,表明对于静电结合,计算出的自由能变化与离子强度的平方根呈线性关系。此外,UV-vis、荧光、CD 数据表明,随着盐浓度的增加,相互作用会减弱。这项研究定量地描述了离子强度如何调节蛋白质-配体静电相互作用的强度。已经发现结合焓和熵可以相互补偿。讨论了弱分子间相互作用的普遍特性——焓熵补偿(EEC)。