海绵相关菌株萎缩芽孢杆菌 C89 的基因组草案序列，一种有潜力的海洋药物产生菌。
Draft genome sequence of the sponge-associated strain Bacillus atrophaeus C89, a potential producer of marine drugs.
机构信息
State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
出版信息
J Bacteriol. 2012 Aug;194(16):4454. doi: 10.1128/JB.00835-12.
Abstract
Bacillus atrophaeus C89, isolated from the marine sponge Dysidea avara, is a potential producer of bioactive compounds, such as neobacillamide A and bacillamide C. Here, we present a 4.2-Mb assembly of its genome. The nonribosomal peptide synthetases (NRPSs) make it possible to produce the bioactive compounds.
摘要
萎缩芽胞杆菌 C89 是从海洋海绵 Dysidea avara 中分离出来的，它是一种有潜力的生物活性化合物的生产者，如 neobacillamide A 和 bacillamide C。在这里，我们呈现了它的基因组的 4.2-Mb 组装。非核糖体肽合成酶（NRPSs）使其能够产生生物活性化合物。
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本文引用的文献
1
De novo assembly of human genomes with massively parallel short read sequencing.
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
2
Metropolitan microbes: type III secretion in multihost symbionts.
Cell Host Microbe. 2007 Nov 15;2(5):291-4. doi: 10.1016/j.chom.2007.10.004.
3
Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.
Microbiol Mol Biol Rev. 2007 Jun;71(2):295-347. doi: 10.1128/MMBR.00040-06.
4
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
5
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
6
The COG database: an updated version includes eukaryotes.
BMC Bioinformatics. 2003 Sep 11;4:41. doi: 10.1186/1471-2105-4-41.
7
Computation with the KEGG pathway database.
Biosystems. 1998 Jun-Jul;47(1-2):119-28. doi: 10.1016/s0303-2647(98)00017-3.
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