College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, 315100, PR China.
J Biomol Struct Dyn. 2013;31(6):572-90. doi: 10.1080/07391102.2012.706074. Epub 2012 Aug 13.
We studied the effects of Zn(2+) on creatine kinase from the Chinese soft-shelled turtle, Pelodiscus sinensis (PSCK). Zn(2+) inactivated the activity of PSCK (IC(50) = .079 ± .004 mM) following first-order kinetics consistent with multiple phases. The spectrofluorimetry results showed that Zn(2+) induced significant tertiary structural changes of PSCK with exposure to hydrophobic surfaces and that Zn(2+) directly induced PSCK aggregation. The addition of osmolytes such as glycine, proline, and liquaemin successfully blocked PSCK aggregation, recovering the conformation and activity of PSCK. We measured the ORF gene sequence of PSCK by rapid amplification of cDNA end and simulated the 3D structure of PSCK. The results of molecular dynamics simulations showed that eight Zn(2+) bind to PSCK and one Zn(2+) is predicted to bind in a plausible active site of creatine and ATP. The interaction of Zn(2+) with the active site could mostly block the activity of PSCK. Our study provides important insight into the action of Zn(2+) on PSCK as well as more insights into the PSCK folding and ligand-binding mechanisms, which could provide important insight into the metabolic enzymes of P. sinensis.
我们研究了 Zn(2+) 对中华鳖肌酸激酶(PSCK)的影响。Zn(2+) 通过一级反应动力学以多相的方式使 PSCK 的活性失活(IC(50) = .079 ± .004 mM)。荧光光谱结果表明,Zn(2+) 诱导 PSCK 发生显著的三级结构变化,暴露出疏水面,并直接诱导 PSCK 聚集。添加甘氨酸、脯氨酸和 liquaemin 等渗透剂可成功阻止 PSCK 聚集,恢复 PSCK 的构象和活性。我们通过快速扩增 cDNA 末端测量了 PSCK 的 ORF 基因序列,并模拟了 PSCK 的 3D 结构。分子动力学模拟结果表明,有 8 个 Zn(2+) 结合到 PSCK 上,有 1 个 Zn(2+) 被预测结合在肌酸和 ATP 的一个合理的活性部位。Zn(2+) 与活性部位的相互作用可能会极大地阻止 PSCK 的活性。我们的研究为 Zn(2+) 对 PSCK 的作用提供了重要的见解,并进一步深入了解了 PSCK 的折叠和配体结合机制,这可能为中华鳖的代谢酶提供重要的见解。