Liu Yu-Shu, Tsai Pei-Wen, Wang Yong, Fan Tan-Chi, Hsieh Chia-Hung, Chang Margaret Dah-Tsyr, Pai Tun-Wen, Huang Chien-Fu, Lan Chung-Yu, Chang Hao-Teng
College of Medicine, China Medical University, Taichung, Taiwan.
BMC Syst Biol. 2012 Aug 20;6:105. doi: 10.1186/1752-0509-6-105.
Eosinophil cationic protein is a clinical asthma biomarker that would be released into blood, especially gathered in bronchia. The signal peptide of eosinophil cationic protein (ECPsp) plays an important role in translocating ECP to the extracellular space. We previously reported that ECPsp inhibits microbial growth and regulates the expression of mammalian genes encoding tumor growth factor-α (TGF-α) and epidermal growth factor receptor (EGFR).
In the present study, we first generated a DNA microarray dataset, which showed that ECPsp upregulated proinflammatory molecules, including chemokines, interferon-induced molecules, and Toll-like receptors. The levels of mRNAs encoding CCL5, CXCL10, CXCL11, CXCL16, STAT1, and STAT2 were increased in the presence of ECPsp by 2.07-, 4.21-, 7.52-, 2.6-, 3.58-, and 1.67-fold, respectively. We then constructed a functional linkage network by integrating the microarray dataset with the pathway database of Kyoto Encyclopedia of Genes and Genomes (KEGG). Follow-up analysis revealed that STAT1 and STAT2, important transcriptional factors that regulate cytokine expression and release, served as hubs to connect the pathways of cytokine stimulation (TGF-α and EGFR pathways) and inflammatory responses. Furthermore, integrating TGF-α and EGFR with the functional linkage network indicated that STAT1 and STAT2 served as hubs that connect two functional clusters, including (1) cell proliferation and survival, and (2) inflammation. Finally, we found that conditioned medium in which cells that express ECPsp had been cultured could chemoattract macrophages. Experimentally, we also demonstrated that the migration of macrophage could be inhibited by the individual treatment of siRNAs of STAT1 or STAT2. Therefore, we hypothesize that ECPsp may function as a regulator for enhancing the migration of macrophages through the upregulation of the transcriptional factors STAT1 and STAT2.
The increased expression and release of various cytokines triggered by ECPsp may attract macrophages to bronchia to purge damaged cells. Our approach, involving experimental and computational systems biology, predicts pathways and potential biological functions for further characterization of this novel function of ECPsp under inflammatory conditions.
嗜酸性粒细胞阳离子蛋白是一种临床哮喘生物标志物,可释放到血液中,尤其聚集在支气管中。嗜酸性粒细胞阳离子蛋白(ECPsp)的信号肽在将ECP转运到细胞外空间中起重要作用。我们之前报道过ECPsp可抑制微生物生长,并调节编码肿瘤生长因子-α(TGF-α)和表皮生长因子受体(EGFR)的哺乳动物基因的表达。
在本研究中,我们首先生成了一个DNA微阵列数据集,该数据集显示ECPsp上调了促炎分子,包括趋化因子、干扰素诱导分子和Toll样受体。在ECPsp存在的情况下,编码CCL5、CXCL10、CXCL11、CXCL16、STAT1和STAT2的mRNA水平分别增加了2.07倍、4.21倍、7.52倍、2.6倍、3.58倍和1.67倍。然后,我们通过将微阵列数据集与京都基因与基因组百科全书(KEGG)的通路数据库整合,构建了一个功能联系网络。后续分析表明,STAT1和STAT2作为调节细胞因子表达和释放的重要转录因子,是连接细胞因子刺激(TGF-α和EGFR通路)和炎症反应通路的枢纽。此外,将TGF-α和EGFR与功能联系网络整合表明,STAT1和STAT2作为连接两个功能簇的枢纽,这两个功能簇包括:(1)细胞增殖和存活,以及(2)炎症。最后,我们发现表达ECPsp的细胞所培养的条件培养基可以趋化巨噬细胞。实验中,我们还证明了单独使用STAT1或STAT2的小干扰RNA(siRNA)处理可抑制巨噬细胞的迁移。因此,我们推测ECPsp可能通过上调转录因子STAT1和STAT2发挥增强巨噬细胞迁移的调节作用。
ECPsp触发的各种细胞因子表达和释放增加,可能会吸引巨噬细胞到支气管以清除受损细胞。我们涉及实验和计算系统生物学的方法,预测了通路和潜在生物学功能,以进一步表征ECPsp在炎症条件下的这种新功能。