Georgescu Andreea I, Denny Samuel J, Joly Emilien, Chen Grace, Perez Danny, Voter Arthur F
Physics and Astronomy, University of California Los Angeles, Los Angeles, California 90095, USA.
Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026703. doi: 10.1103/PhysRevE.86.026703. Epub 2012 Aug 3.
Stochastic thermostats commonly used in molecular dynamics trajectories are known, under certain conditions, to exhibit a synchronization effect whereby trajectories initialized at different points in phase space synchronize to a single master trajectory if they are subjected to the same sequence of random forces. We investigate the spatiotemporal robustness of this effect analytically and with molecular dynamics simulations in one and three dimensions in the strong coupling limit. We first investigate the response of the system to a time- and spacewise local perturbation and show that desynchronization behaves diffusively at long times for infinite systems. We then explore the behavior of temporally persistent but spatially local perturbations and observe strikingly different behaviors as a function of dimensionality: in one dimension, the desynchronization propagates through the whole lattice and grows with time, while in three dimensions, the desynchronization remains localized in the neighborhood of the perturbation.
分子动力学轨迹中常用的随机恒温器在某些条件下已知会表现出一种同步效应,即在相空间中不同点初始化的轨迹,如果受到相同的随机力序列作用,会同步到单个主轨迹。我们在强耦合极限下,通过一维和三维的分子动力学模拟对这种效应的时空鲁棒性进行了分析研究。我们首先研究了系统对时空局部扰动的响应,并表明对于无限系统,长时间去同步表现为扩散行为。然后我们探索了时间上持续但空间上局部的扰动的行为,并观察到作为维度函数的显著不同行为:在一维中,去同步通过整个晶格传播并随时间增长,而在三维中,去同步仍局限于扰动的邻域内。