Marwaha Rakesh Kumar, Jangra Harish, Das Kinkar C, Bharatam P V, Madan A K
Faculty of Pharmaceutical Sciences, M.D. University, Rohtak 124-001, India.
Int J Comput Biol Drug Des. 2012;5(3-4):335-60. doi: 10.1504/IJCBDD.2012.049201. Epub 2012 Sep 24.
In the present study, four detour matrix-based Topological Indices (TIs) termed as augmented path eccentric connectivity indices 1-4 (denoted by (AP)ξ(1)(C), (AP)ξ(2)(C), (AP)ξ(3)(C) and (AP)ξ(4)(C)) as well as their topochemical versions (denoted by (AP)ξ(1c)(C), (AP)ξ(2c)(C), (AP)ξ(3c)(C) and (AP)ξ(4c)(C)) have been conceptualised. A modified detour matrix termed as chemical detour matrix (Δ(c)) has also been proposed so as to facilitate computation of index values of topochemical versions of the said TIs. Values of the proposed TIs were computed for all the possible structures containing three, four and five vertices using an in-house computer program. The said TIs exhibited exceptionally high discriminating power and high sensitivity towards branching/relative position of substituent(s) in cyclic structures amalgamated with negligible degeneracy. Due care was taken during the development of TIs so as to ensure that reduction in index values of complex chemical structures to be within reasonable limits without compromising discriminating power. The mathematical properties of one of the proposed TIs have also been studied. With exceptionally high discriminating power, high sensitivity towards branching as well as relative position(s) of substituents in cyclic structures and negligible degeneracy, the proposed indices offer a vast potential for use in characterisation of structures, similarity/dissimilarity studies, lead identification and optimisation, combinatorial library design and quantitative structure-activity/property/toxicity/pharmacokinetic relationship studies.
在本研究中,已概念化了四种基于迂回矩阵的拓扑指数(TIs),称为增强路径偏心连接性指数1 - 4(由(AP)ξ(1)(C)、(AP)ξ(2)(C)、(AP)ξ(3)(C)和(AP)ξ(4)(C)表示)及其拓扑化学版本(由(AP)ξ(1c)(C)、(AP)ξ(2c)(C)、(AP)ξ(3c)(C)和(AP)ξ(4c)(C)表示)。还提出了一种称为化学迂回矩阵(Δ(c))的修正迂回矩阵,以便于计算上述TIs拓扑化学版本的指数值。使用内部计算机程序,针对所有包含三个、四个和五个顶点的可能结构计算了所提出TIs的值。所述TIs对环状结构中取代基的分支/相对位置表现出极高的辨别能力和高灵敏度,且简并性可忽略不计。在开发TIs时已格外小心,以确保复杂化学结构的指数值降低在合理范围内,同时不影响辨别能力。还研究了所提出TIs之一的数学性质。所提出的指数具有极高的辨别能力、对环状结构中取代基的分支以及相对位置的高灵敏度和可忽略不计的简并性,在结构表征、相似性/差异性研究、先导化合物识别与优化、组合库设计以及定量构效/构性/毒性/药代动力学关系研究中具有巨大的应用潜力。