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HIV-1 适应性与突变率之间的相互关系。

Interrelationship between HIV-1 fitness and mutation rate.

机构信息

Institute for Molecular Virology, Academic Health Center, University of Minnesota, Minneapolis, MN 55455, USA.

出版信息

J Mol Biol. 2013 Jan 9;425(1):41-53. doi: 10.1016/j.jmb.2012.10.009. Epub 2012 Oct 16.

Abstract

Differences in replication fidelity, as well as mutator and antimutator strains, suggest that virus mutation rates are heritable and prone to natural selection. Human immunodeficiency virus type 1 (HIV-1) has many distinct advantages for the study of mutation rate optimization given the wealth of structural and biochemical data on HIV-1 reverse transcriptase (RT) and mutants. In this study, we conducted parallel analyses of mutation rate and viral fitness. In particular, a panel of 10 RT mutants-most having drug resistance phenotypes-was analyzed for their effects on viral fidelity and fitness. Fidelity differences were measured using single-cycle vector assays, while fitness differences were identified using ex vivo head-to-head competition assays. As anticipated, virus mutants possessing either higher or lower fidelity had a corresponding loss in fitness. While the virus panel was not chosen randomly, it is interesting that it included more viruses possessing a mutator phenotype rather than viruses possessing an antimutator phenotype. These observations provide the first description of an interrelationship between HIV-1 fitness and mutation rate and support the conclusion that mutator and antimutator phenotypes correlate with reduced viral fitness. In addition, the findings here help support a model in which fidelity comes at a cost of replication kinetics and may help explain why retroviruses like HIV-1 and RNA viruses maintain replication fidelity near the extinction threshold.

摘要

复制保真度的差异,以及突变体和抗突变体菌株,表明病毒突变率是可遗传的,并容易受到自然选择的影响。人类免疫缺陷病毒 1 型(HIV-1)具有许多明显的优势,适合研究突变率的优化,因为 HIV-1 逆转录酶(RT)和突变体有大量的结构和生化数据。在这项研究中,我们对突变率和病毒适应性进行了平行分析。特别是,对一组 10 个 RT 突变体(大多数具有耐药表型)进行了分析,以研究它们对病毒保真度和适应性的影响。保真度差异使用单循环载体测定法进行测量,而适应性差异使用体外头对头竞争测定法确定。正如预期的那样,具有更高或更低保真度的病毒突变体适应性相应降低。虽然病毒组不是随机选择的,但有趣的是,它包括更多具有突变体表型的病毒,而不是具有抗突变体表型的病毒。这些观察结果首次描述了 HIV-1 适应性和突变率之间的相互关系,并支持这样的结论,即突变体和抗突变体表型与病毒适应性降低相关。此外,这里的发现有助于支持一种模型,即保真度是以复制动力学为代价的,这可能有助于解释为什么像 HIV-1 和 RNA 病毒这样的逆转录病毒在接近灭绝阈值时保持复制保真度。

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