癌症药物敏感性基因组学(GDSC):癌症细胞治疗生物标志物发现的资源。
Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells.
机构信息
Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.
出版信息
Nucleic Acids Res. 2013 Jan;41(Database issue):D955-61. doi: 10.1093/nar/gks1111. Epub 2012 Nov 23.
Alterations in cancer genomes strongly influence clinical responses to treatment and in many instances are potent biomarkers for response to drugs. The Genomics of Drug Sensitivity in Cancer (GDSC) database (www.cancerRxgene.org) is the largest public resource for information on drug sensitivity in cancer cells and molecular markers of drug response. Data are freely available without restriction. GDSC currently contains drug sensitivity data for almost 75 000 experiments, describing response to 138 anticancer drugs across almost 700 cancer cell lines. To identify molecular markers of drug response, cell line drug sensitivity data are integrated with large genomic datasets obtained from the Catalogue of Somatic Mutations in Cancer database, including information on somatic mutations in cancer genes, gene amplification and deletion, tissue type and transcriptional data. Analysis of GDSC data is through a web portal focused on identifying molecular biomarkers of drug sensitivity based on queries of specific anticancer drugs or cancer genes. Graphical representations of the data are used throughout with links to related resources and all datasets are fully downloadable. GDSC provides a unique resource incorporating large drug sensitivity and genomic datasets to facilitate the discovery of new therapeutic biomarkers for cancer therapies.
癌症基因组的改变强烈影响着对治疗的临床反应,在许多情况下,它们是药物反应的有力生物标志物。癌症药物敏感性基因组学(GDSC)数据库(www.cancerRxgene.org)是癌症细胞药物敏感性和药物反应分子标志物信息的最大公共资源。数据不受限制地免费提供。GDSC 目前包含近 75000 项实验的药物敏感性数据,描述了近 700 种癌细胞系对 138 种抗癌药物的反应。为了识别药物反应的分子标志物,将细胞系药物敏感性数据与从癌症体细胞突变目录数据库获得的大型基因组数据集进行整合,包括癌症基因中的体细胞突变、基因扩增和缺失、组织类型和转录数据的信息。通过一个专注于基于特定抗癌药物或癌症基因查询来识别药物敏感性分子生物标志物的网络门户来分析 GDSC 数据。整个数据都使用图形表示,并链接到相关资源,所有数据集都可完全下载。GDSC 提供了一个独特的资源,整合了大型药物敏感性和基因组数据集,以促进发现癌症治疗的新治疗生物标志物。