a School of Pharmacy, China Medical University , Taichung , 40402 , Taiwan .
J Biomol Struct Dyn. 2013 Dec;31(12):1411-39. doi: 10.1080/07391102.2012.741052. Epub 2012 Dec 19.
Cognitive repair by insulin-like growth factor-I (IGF-I) through activation of insulin-like growth factor-I receptor (IGF-IR) is well established, but not used for clinical therapy due to its link to cancer. We hypothesize that IGF-IR activation rather than IGF-I per se may be essential for cognitive repair and attempted to identify ligands from traditional Chinese medicine (TCM) with drug-like potential towards IGF-IR. TCM ligands, 3-(2-carboxyphenyl)-4(3H)-quinazolinone from Isatisin digotica, (+)-N-methyllaurotetanine from Lindera aggregate, and (+)-1(R)-Coclaurine from Nelumbonucifera Gaertn, exhibited high binding affinities and good blood brain barrier (BBB) penetration crucial for accessing IGF-IR. Stable complex formation of the candidates was observed during molecular dynamics (MD) simulation. Interactions with Leu975 and Gly1055 or Asp1056 were important for ligand binding. Amino acid distance analysis revealed residues 974/975, 984-986, 996-1006, 1040-1056, and 1122-1135 as "hotspots" for ligand binding in IGF-IR. Versatile entry pathways for the TCM candidates suggest high accessibility to the binding site. Blockage of the binding site opening by the TCM candidates limits binding site access by other compounds. Multiple linear regression (R² = 0.9715), support vector machine (R² = 0.9084), Bayesian network (R² =0.8233) comparative molecular field analysis (CoMFA, R² = 0.9941), and comparative molecular similarity indices analysis (CoMSIA, R² = 0.9877) models consistently suggest that the TCM candidates might exert bioactivity on IGF-IR. Contour of representative MD conformations to CoMFA and CoMSIA maps exhibits similar results. Properties including BBB passage, evidence of ability to form stable complexes with IGF-IR by MD simulation, and predicted bioactivity suggest that the TCM candidates have drug-like properties and might have potential as cognitive-enhancing drugs.
胰岛素样生长因子-I(IGF-I)通过胰岛素样生长因子-I 受体(IGF-IR)的激活进行认知修复已得到充分证实,但由于其与癌症有关,因此并未用于临床治疗。我们假设 IGF-IR 的激活而不是 IGF-I 本身对于认知修复可能是必不可少的,并试图从传统中药(TCM)中识别出具有潜在药用价值的 IGF-IR 配体。TCM 配体,来自靛蓝的 3-(2-羧基苯基)-4(3H)-喹唑啉酮、来自黄皮的(+)-N-甲基劳特替宁和来自荷花的(+)-1(R)-荷叶碱,表现出高结合亲和力和良好的血脑屏障(BBB)穿透性,这对于接触 IGF-IR 至关重要。在分子动力学(MD)模拟过程中观察到候选物的稳定复合物形成。与 Leu975 和 Gly1055 或 Asp1056 的相互作用对于配体结合很重要。氨基酸距离分析显示,残基 974/975、984-986、996-1006、1040-1056 和 1122-1135 是 IGF-IR 中配体结合的“热点”。TCM 候选物的多种进入途径表明其与结合位点具有高可及性。TCM 候选物阻断结合位点的打开限制了其他化合物进入结合位点。多元线性回归(R²=0.9715)、支持向量机(R²=0.9084)、贝叶斯网络(R²=0.8233)比较分子场分析(CoMFA,R²=0.9941)和比较分子相似性指数分析(CoMSIA,R²=0.9877)模型一致表明,TCM 候选物可能对 IGF-IR 发挥生物活性。代表性 MD 构象的 CoMFA 和 CoMSIA 图谱轮廓显示出相似的结果。包括 BBB 穿透性、通过 MD 模拟与 IGF-IR 形成稳定复合物的能力证据以及预测的生物活性在内的特性表明,TCM 候选物具有类药性,可能具有作为认知增强药物的潜力。