Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48823, USA.
Nucleic Acids Res. 2013 Mar 1;41(5):3217-27. doi: 10.1093/nar/gks1475. Epub 2013 Jan 15.
Ribosome biogenesis GTPase A protein (RbgA) is an essential GTPase required for the biogenesis of the 50S subunit in Bacillus subtilis. Homologs of RbgA are widely distributed in bacteria and eukaryotes and are implicated in ribosome assembly in the mitochondria, chloroplast and cytoplasm. Cells depleted of RbgA accumulate an immature large subunit that is missing key ribosomal proteins. RbgA, unlike many members of the Ras superfamily of GTPases, lacks a defined catalytic residue for carrying out guanosine triphosphate (GTP) hydrolysis. To probe RbgA function in ribosome assembly, we used a combined bioinformatics, genetic and biochemical approach. We identified a RNA-binding domain within the C-terminus of RbgA that is structurally similar to AmiR-NasR Transcription Anti-termination Regulator (ANTAR) domains, which are known to bind structured RNA. Mutation of key residues in the ANTAR domain altered RbgA association with the ribosome. We identified a putative catalytic residue within a highly conserved region of RbgA, His9, which is contained within a similar PGH motif found in elongation factor Tu (EF-Tu) that is required for GTP hydrolysis on interaction with the ribosome. Finally, our results support a model in which the GTPase activity of RbgA directly participates in the maturation of the large subunit rather than solely promoting dissociation of RbgA from the 50S subunit.
核糖体生物发生 GTP 酶 A 蛋白(RbgA)是枯草芽孢杆菌 50S 亚基生物发生所必需的 GTP 酶。RbgA 的同源物广泛分布于细菌和真核生物中,并参与线粒体、叶绿体和细胞质中的核糖体组装。耗尽 RbgA 的细胞会积累缺少关键核糖体蛋白的不成熟大亚基。与 Ras 超家族的许多 GTP 酶不同,RbgA 缺乏用于进行鸟嘌呤三磷酸 (GTP) 水解的明确催化残基。为了研究 RbgA 在核糖体组装中的功能,我们采用了组合生物信息学、遗传和生化方法。我们在 RbgA 的 C 端鉴定出一个 RNA 结合域,其结构类似于 AmiR-NasR 转录抗终止调节剂 (ANTAR) 结构域,已知该结构域结合结构 RNA。ANTAR 结构域中的关键残基突变改变了 RbgA 与核糖体的结合。我们在 RbgA 的高度保守区域内鉴定出一个假定的催化残基 His9,该残基包含在与核糖体相互作用时需要 GTP 水解的延伸因子 Tu (EF-Tu) 中的类似 PGH 基序内。最后,我们的结果支持这样一种模型,即 RbgA 的 GTP 酶活性直接参与大亚基的成熟,而不仅仅是促进 RbgA 与 50S 亚基的解离。