Max Planck Institute for Biophysical Chemistry, Department of NMR-based Structural Biology, Am Fassberg 11, 37077 Göttingen, Germany.
J Magn Reson. 2013 Mar;228:45-9. doi: 10.1016/j.jmr.2012.12.017. Epub 2013 Jan 4.
The unambiguous stereospecific assignment of the prochiral methyl groups in Val and Leu plays an important role in the structural investigation of proteins by NMR. Here, we present a straightforward method for their stereospecific solid-state NMR assignment based on [2-(13)C]Glucose ([2-(13)C]Glc) as the sole carbon source during protein expression. The approach is fundamentally based on the stereo-selective biosynthetic pathway of Val and Leu, and the co-presence of [2-(13)C]pyruvate produced mainly by glycolysis and [3-(13)C]/[1,3-(13)C]pyruvate most probably formed through scrambling in the pentose phosphate pathway. As a consequence, the isotope spin pairs (13)Cβ-(13)Cγ2 and (13)Cα-(13)Cγ1 in Val, and (13)Cγ-(13)Cδ2 and (13)Cβ-(13)Cδ1 in Leu are obtained. The approach is successfully demonstrated with the stereospecific assignment of the methyl groups of Val and Leu of type 3 secretion system PrgI needles and microcrystalline ubiquitin.
在手性中心甲基的明确立体专一性分配在通过 NMR 研究蛋白质结构中起着重要作用。在这里,我们提出了一种基于 [2-(13)C]葡萄糖 ([2-(13)C]Glc) 作为蛋白质表达过程中唯一碳源的简单方法,用于其在固态 NMR 中的立体专一性分配。该方法的基本原理是基于 Val 和 Leu 的立体选择性生物合成途径,以及主要由糖酵解产生的 [2-(13)C]丙酮酸和可能通过戊糖磷酸途径重排形成的 [3-(13)C]/[1,3-(13)C]丙酮酸的共同存在。因此,可以得到 Val 中的同位素自旋对 (13)Cβ-(13)Cγ2 和 (13)Cα-(13)Cγ1,以及 Leu 中的 (13)Cγ-(13)Cδ2 和 (13)Cβ-(13)Cδ1。该方法成功地应用于 3 型分泌系统 PrgI 针和微晶泛素中 Val 和 Leu 的甲基的立体专一性分配。