School of Science, Nanjing University of Science and Technology, Nanjing 210094, China.
J Phys Chem B. 2013 May 30;117(21):6541-6. doi: 10.1021/jp3120397. Epub 2013 May 16.
The folding process of a single chain including coil-globule transition and crystallization has been investigated through dynamic Monte Carlo simulations. The results based upon ensemble averaging illustrated three distinct states: coil, molten globule, and globule states. Furthermore, the crystallization process from these collapsed states demonstrated various characteristics and it also verified the thermodynamic partitions. The isothermal crystallization in the three states showed the folding rates, and the final crystallite morphologies strongly depended on the collapsed states. Especially, the onset temperature of crystallization in the intermediate molten globule state demonstrated the strongest sensitivity to the solvent qualities in the three different states. Moreover, the crystallization in this intermediate state illustrated a two-step folding mechanism with the prior dense core serving as a precursor to induce the subsequent crystallization. Our observations would help in understanding the thermodynamics and kinetics of phase transition of a single macromolecule. Possible relations to the protein folding were also discussed.
通过动态蒙特卡罗模拟研究了包括无规线团-折叠转变和结晶在内的单链折叠过程。基于系综平均的结果表明存在三种不同的状态:无规线团、伸展的无规线团和折叠状态。此外,从这些折叠状态的结晶过程表现出各种特性,也验证了热力学划分。三种状态下的等温结晶表明了折叠速率,而最终的结晶形貌强烈依赖于折叠状态。特别是,在中间伸展的无规线团状态下的结晶起始温度对三种不同状态下溶剂质量表现出最强的敏感性。此外,该中间状态下的结晶呈现出两步折叠机制,其中致密核作为前体诱导后续结晶。我们的观察结果将有助于理解单个大分子相转变的热力学和动力学。还讨论了与蛋白质折叠的可能关系。