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开发用于肌强直性营养不良 1 型(DM1)基因检测的基因组 DNA 参考材料面板。

Development of a genomic DNA reference material panel for myotonic dystrophy type 1 (DM1) genetic testing.

机构信息

Division of Laboratory Science and Standards, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.

出版信息

J Mol Diagn. 2013 Jul;15(4):518-25. doi: 10.1016/j.jmoldx.2013.03.008. Epub 2013 May 13.

Abstract

Myotonic dystrophy type 1 (DM1) is caused by expansion of a CTG triplet repeat in the 3' untranslated region of the DMPK gene that encodes a serine-threonine kinase. Patients with larger repeats tend to have a more severe phenotype. Clinical laboratories require reference and quality control materials for DM1 diagnostic and carrier genetic testing. Well-characterized reference materials are not available. To address this need, the Centers for Disease Control and Prevention-based Genetic Testing Reference Material Coordination Program, in collaboration with members of the genetic testing community, the National Registry of Myotonic Dystrophy and Facioscapulohumeral Muscular Dystrophy Patients and Family Members, and the Coriell Cell Repositories, has established and characterized cell lines from patients with DM1 to create a reference material panel. The CTG repeats in genomic DNA samples from 10 DM1 cell lines were characterized in three clinical genetic testing laboratories using PCR and Southern blot analysis. DMPK alleles in the samples cover four of five DM1 clinical categories: normal (5 to 34 repeats), mild (50 to 100 repeats), classical (101 to 1000 repeats), and congenital (>1000 repeats). We did not identify or establish Coriell cell lines in the premutation range (35 to 49 repeats). These samples are publicly available for quality control, proficiency testing, test development, and research and should help improve the accuracy of DM1 testing.

摘要

肌强直性营养不良 1 型(DM1)是由 DMPK 基因 3'非翻译区的 CTG 三核苷酸重复扩展引起的,该基因编码丝氨酸-苏氨酸激酶。具有较大重复的患者往往具有更严重的表型。临床实验室需要 DM1 诊断和携带者基因检测的参考和质量控制材料。目前尚无特征明确的参考材料。为满足这一需求,疾病预防控制中心(CDC)基于遗传检测参考材料协调计划,与遗传检测界成员、全国肌强直性营养不良和面肩肱型肌营养不良患者和家庭成员登记处以及科里尔细胞库合作,建立并鉴定了来自 DM1 患者的细胞系,以创建参考材料面板。使用 PCR 和 Southern blot 分析,在三个临床遗传检测实验室中对来自 10 个 DM1 细胞系的基因组 DNA 样本中的 CTG 重复进行了特征分析。样本中的 DMPK 等位基因涵盖了 DM1 临床五类中的四类:正常(5 至 34 个重复)、轻度(50 至 100 个重复)、经典(101 至 1000 个重复)和先天性(>1000 个重复)。我们未在 35 至 49 个重复的前突变范围内鉴定或建立科里尔细胞系。这些样本可用于质量控制、能力验证、测试开发以及研究,应有助于提高 DM1 测试的准确性。

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