J Theor Biol. 2013 Oct 21;335:295-8. doi: 10.1016/j.jtbi.2013.07.002. Epub 2013 Jul 13.
Evolutionary events such as incomplete lineage sorting and lateral gene transfers constitute major problems for inferring species trees from gene trees, as they can sometimes lead to gene trees which conflict with the underlying species tree. One particularly simple and efficient way to infer species trees from gene trees under such conditions is to combine three-taxon analyses for several genes using a majority vote approach. For incomplete lineage sorting this method is known to be statistically consistent; however, for lateral gene transfers it was recently shown that a zone of inconsistency exists for a specific four-taxon tree topology, and it was posed as an open question whether inconsistencies could exist for other four-taxon tree topologies? In this letter we analyze all remaining four-taxon topologies and show that no other inconsistencies exist.
进化事件,如不完全谱系分选和侧向基因转移,是从基因树推断物种树的主要问题,因为它们有时会导致与基础物种树冲突的基因树。在这种情况下,从基因树推断物种树的一种特别简单和有效的方法是使用多数票法组合几个基因的三分类分析。对于不完全谱系分选,这种方法在统计上是一致的;然而,对于侧向基因转移,最近有人指出,对于特定的四分类树拓扑,存在一个不一致区域,并且提出了一个悬而未决的问题,即其他四分类树拓扑是否可能存在不一致?在这封信中,我们分析了所有剩余的四分类拓扑结构,表明不存在其他不一致。