Bragg Institute, ANSTO, Locked Bag 2001, Kirrawee DC, NSW, 2232 Australia.
Biophys Chem. 2013 Oct-Nov;180-181:145-52. doi: 10.1016/j.bpc.2013.07.012. Epub 2013 Aug 3.
We have investigated the structure of recombinant catechol 2, 3-dioxygenase (C23O) purified from two species in which the enzyme has evolved to function at different temperature. The two species are mesophilic bacterium Pseudomonas putida strain mt-2 and thermophilic archaea Sulfolobus acidocaldariusDSM639. Using the primary sequence analysis, we show that both C23Os have only 30% identity and 48% similarity but contain conserved amino acid residues forming an active site area around the iron ion. The corresponding differences in homology, but structural similarity in active area residues, appear to provide completely different responses to heating the two enzymes. We confirm this by small angle X-ray scattering and demonstrate that the overall structure of C23O from P. putida is slightly different from its crystalline form whereas the solution scattering of C23O from S. acidocaldarius at temperatures between 4 and 85°C ideally fits the calculated scattering from the single crystal structure. The thermostability of C23O from S. acidocaldarius correlates well with conformation in solution during thermal treatment. The similarity of the two enzymes in primary and tertiary structure may be taken as a confirmation that two enzymes have evolved from a common ancestor.
我们研究了两种在不同温度下进化以发挥功能的重组儿茶酚 2,3-双加氧酶 (C23O) 的结构。这两个物种是嗜温细菌恶臭假单胞菌 mt-2 和嗜热古菌嗜酸热硫化叶菌 DSM639。通过对一级序列的分析,我们表明两种 C23O 的同源性只有 30%,相似性为 48%,但都包含形成铁离子活性部位的保守氨基酸残基。同源性的差异,但是活性区域残基的结构相似性,似乎为两种酶的加热提供了完全不同的反应。我们通过小角度 X 射线散射证实了这一点,并证明来自恶臭假单胞菌的 C23O 的整体结构与晶体形式略有不同,而在 4 至 85°C 之间温度下来自嗜酸热硫化叶菌的 C23O 的溶液散射理想地符合从单晶结构计算出的散射。来自嗜酸热硫化叶菌的 C23O 的热稳定性与热处理过程中的溶液构象密切相关。两种酶在一级和三级结构上的相似性可以被视为两种酶从共同祖先进化而来的确认。