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拟南芥 MHX 基因包含一个内含子元件,当该元件定位于 5'UTR 内含子时,能促进翻译。

The Arabidopsis thaliana MHX gene includes an intronic element that boosts translation when localized in a 5' UTR intron.

机构信息

The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.

出版信息

J Exp Bot. 2013 Nov;64(14):4255-70. doi: 10.1093/jxb/ert235. Epub 2013 Sep 4.

Abstract

The mechanisms that underlie the ability of some introns to increase gene expression, a phenomenon called intron-mediated enhancement (IME), are not fully understood. It is also not known why introns localized in the 5'-untranslated region (5' UTR) are considerably longer than downstream eukaryotic introns. It was hypothesized that this extra length results from the presence of some functional intronic elements. However, deletion analyses studies carried out thus far were unable to identify specific intronic regions necessary for IME. Using deletion analysis and a gain-of-function approach, an internal element that considerably increases translational efficiency, without affecting splicing, was identified in the 5' UTR intron of the Arabidopsis thaliana MHX gene. Moreover, the ability of this element to enhance translation was diminished by a minor downstream shift in the position of introns containing it from the 5' UTR into the coding sequence. These data suggest that some of the extra length of 5' UTR introns results from the presence of elements that enhance translation, and, moreover, from the ability of 5' UTR introns to provide preferable platforms for such elements over downstream introns. The impact of the identified intronic element on translational efficiency was augmented upon removal of neighbouring intronic elements. Interference between different intronic elements had not been reported thus far. This interference may support the bioinformatics-based idea that some of the extra sequence of 5' UTR introns is also necessary for separating different functional intronic elements.

摘要

一些内含子能够增强基因表达的机制,即所谓的内含子介导增强(IME),其原理尚未完全阐明。也不知道为什么定位于 5' 非翻译区(5'UTR)的内含子比下游真核内含子长得多。有人假设这种额外的长度是由于存在一些具有功能的内含子元件。然而,迄今为止进行的删除分析研究未能确定 IME 所必需的特定内含子区域。通过删除分析和功能获得方法,在拟南芥 MHX 基因的 5'UTR 内含子中鉴定出一个内部元件,该元件在不影响剪接的情况下显著提高翻译效率。此外,通过将含有该元件的内含子从 5'UTR 转移到编码序列中的位置稍微向下游移动,该元件增强翻译的能力降低。这些数据表明,5'UTR 内含子的一些额外长度是由于存在增强翻译的元件,而且 5'UTR 内含子能够为这些元件提供优于下游内含子的优选平台。当去除相邻内含子时,鉴定出的内含子元件对翻译效率的影响增强。迄今为止,尚未报道不同内含子元件之间的干扰。这种干扰可能支持基于生物信息学的观点,即 5'UTR 内含子的一些额外序列对于分离不同功能的内含子元件也是必需的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd95/3808313/6322bd85deb6/exbotj_ert235_f0001.jpg

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