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Sizing up Septoria.

机构信息

CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands ; Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands.

出版信息

Stud Mycol. 2013 Jun 30;75(1):307-90. doi: 10.3114/sim0017.

DOI:10.3114/sim0017
PMID:24014902
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3713890/
Abstract

UNLABELLED

Septoria represents a genus of plant pathogenic fungi with a wide geographic distribution, commonly associated with leaf spots and stem cankers of a broad range of plant hosts. A major aim of this study was to resolve the phylogenetic generic limits of Septoria, Stagonospora, and other related genera such as Sphaerulina, Phaeosphaeria and Phaeoseptoria using sequences of the the partial 28S nuclear ribosomal RNA and RPB2 genes of a large set of isolates. Based on these results Septoria is shown to be a distinct genus in the Mycosphaerellaceae, which has mycosphaerella-like sexual morphs. Several septoria-like species are now accommodated in Sphaerulina, a genus previously linked to this complex. Phaeosphaeria (based on P. oryzae) is shown to be congeneric with Phaeoseptoria (based on P. papayae), which is reduced to synonymy under the former. Depazea nodorum (causal agent of nodorum blotch of cereals) and Septoria avenae (causal agent of avenae blotch of barley and rye) are placed in a new genus, Parastagonospora, which is shown to be distinct from Stagonospora (based on S. paludosa) and Phaeosphaeria. Partial nucleotide sequence data for five gene loci, ITS, LSU, EF-1α, RPB2 and Btub were generated for all of these isolates. A total of 47 clades or genera were resolved, leading to the introduction of 14 new genera, 36 new species, and 19 new combinations.

TAXONOMIC NOVELTIES

New genera - Acicuseptoria Quaedvlieg, Verkley & Crous, Cylindroseptoria Quaedvlieg, Verkley & Crous, Kirstenboschia Quaedvlieg, Verkley & Crous, Neoseptoria Quaedvlieg, Verkley & Crous, Neostagonospora Quaedvlieg, Verkley & Crous, Parastagonospora Quaedvlieg, Verkley & Crous, Polyphialoseptoria Quaedvlieg, R.W. Barreto, Verkley & Crous, Ruptoseptoria Quaedvlieg, Verkley & Crous, Septorioides Quaedvlieg, Verkley & Crous, Setoseptoria Quaedvlieg, Verkley & Crous, Stromatoseptoria Quaedvlieg, Verkley & Crous, Vrystaatia Quaedvlieg, W.J. Swart, Verkley & Crous, Xenobotryosphaeria Quaedvlieg, Verkley & Crous, Xenoseptoria Quaedvlieg, H.D. Shin, Verkley & Crous. New species - Acicuseptoria rumicis Quaedvlieg, Verkley & Crous, Caryophylloseptoria pseudolychnidis Quaedvlieg, H.D. Shin, Verkley & Crous, Coniothyrium sidae Quaedvlieg, Verkley, R.W. Barreto & Crous, Corynespora leucadendri Quaedvlieg, Verkley & Crous, Cylindroseptoria ceratoniae Quaedvlieg, Verkley & Crous, Cylindroseptoria pistaciae Quaedvlieg, Verkley & Crous, Kirstenboschia diospyri Quaedvlieg, Verkley & Crous, Neoseptoria caricis Quaedvlieg, Verkley & Crous, Neostagonospora caricis Quaedvlieg, Verkley & Crous, Neostagonospora elegiae Quaedvlieg, Verkley & Crous, Paraphoma dioscoreae Quaedvlieg, H.D. Shin, Verkley & Crous, Parastagonospora caricis Quaedvlieg, Verkley & Crous, Parastagonospora poae Quaedvlieg, Verkley & Crous, Phlyctema vincetoxici Quaedvlieg, Verkley & Crous, Polyphialoseptoria tabebuiae-serratifoliae Quaedvlieg, Alfenas & Crous, Polyphialoseptoria terminaliae Quaedvlieg, R.W. Barreto, Verkley & Crous, Pseudoseptoria collariana Quaedvlieg, Verkley & Crous, Pseudoseptoria obscura Quaedvlieg, Verkley & Crous, Sclerostagonospora phragmiticola Quaedvlieg, Verkley & Crous, Septoria cretae Quaedvlieg, Verkley & Crous, Septoria glycinicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria oenanthicola Quaedvlieg, H.D. Shin, Verkley & Crous, Septoria pseudonapelli Quaedvlieg, H.D. Shin, Verkley & Crous, Setophoma chromolaenae Quaedvlieg, Verkley, R.W. Barreto & Crous, Setoseptoria phragmitis Quaedvlieg, Verkley & Crous, Sphaerulina amelanchier Quaedvlieg, Verkley & Crous, Sphaerulina pseudovirgaureae Quaedvlieg, Verkley & Crous, Sphaerulina viciae Quaedvlieg, H.D. Shin, Verkley & Crous, Stagonospora duoseptata Quaedvlieg, Verkley & Crous, Stagonospora perfecta Quaedvlieg, Verkley & Crous, Stagonospora pseudocaricis Quaedvlieg, Verkley, Gardiennet & Crous, Stagonospora pseudovitensis Quaedvlieg, Verkley & Crous, Stagonospora uniseptata Quaedvlieg, Verkley & Crous, Vrystaatia aloeicola Quaedvlieg, Verkley, W.J. Swart & Crous, Xenobotryosphaeria calamagrostidis Quaedvlieg, Verkley & Crous, Xenoseptoria neosaccardoi Quaedvlieg, H.D. Shin, Verkley & Crous. New combinations - Parastagonospora avenae (A.B. Frank) Quaedvlieg, Verkley & Crous, Parastagonospora nodorum (Berk.) Quaedvlieg, Verkley & Crous, Phaeosphaeria papayae (Speg.) Quaedvlieg, Verkley & Crous, Pseudocercospora domingensis (Petr. & Cif.) Quaedvlieg, Verkley & Crous, Ruptoseptoria unedonis (Roberge ex Desm.) Quaedvlieg, Verkley & Crous, Septorioides pini-thunbergii (S. Kaneko) Quaedvlieg, Verkley & Crous, Sphaerulina abeliceae (Hiray.) Quaedvlieg, Verkley & Crous, Sphaerulina azaleae (Voglino) Quaedvlieg, Verkley & Crous, Sphaerulina berberidis (Niessl) Quaedvlieg, Verkley & Crous, Sphaerulina betulae (Pass.) Quaedvlieg, Verkley & Crous, Sphaerulina cercidis (Fr.) Quaedvlieg, Verkley & Crous, Sphaerulina menispermi (Thüm.) Quaedvlieg, Verkley & Crous, Sphaerulina musiva (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina oxyacanthae (Kunze & J.C. Schmidt) Quaedvlieg, Verkley & Crous, Sphaerulina patriniae (Miura) Quaedvlieg, Verkley & Crous, Sphaerulina populicola (Peck) Quaedvlieg, Verkley & Crous, Sphaerulina quercicola (Desm.) Quaedvlieg, Verkley & Crous, Sphaerulina rhabdoclinis (Butin) Quaedvlieg, Verkley & Crous, Stromatoseptoria castaneicola (Desm.) Quaedvlieg, Verkley & Crous. Typifications: Epitypifications - Phaeosphaeria oryzae I. Miyake, Phaeoseptoria papayae Speg.; Neotypification - Hendersonia paludosa Sacc. & Speg.

摘要

未命名

Septoria 代表一个具有广泛地理分布的植物病原真菌属，通常与多种植物宿主的叶斑和茎溃疡有关。本研究的主要目的是使用大量分离物的部分 28S 核核糖体 RNA 和 RPB2 基因序列，解决 Septoria、Stagonospora 和其他相关属（如 Sphaerulina、Phaeosphaeria 和 Phaeoseptoria）的系统发育属界限制。基于这些结果，Septoria 被证明是 Mycosphaerellaceae 中的一个独特属，具有 mycosphaerella 样有性形态。现在将几个 septoria 样种归入 Sphaerulina 属，该属以前与这个复合体有关。Phaeosphaeria（基于 P. oryzae）与 Phaeoseptoria（基于 P. papayae）同源，后者在前者中被归为同义词。Depazea nodorum（谷物褐斑病的病原菌）和 Septoria avenae（大麦和黑麦褐斑病的病原菌）被置于一个新属 Parastagonospora 中，该属与 Stagonospora（基于 S. paludosa）和 Phaeosphaeria 不同。对所有这些分离物的五个基因座的 ITS、LSU、EF-1α、RPB2 和 Btub 的部分核苷酸序列数据进行了生成。总共解决了 47 个分支或属，导致引入了 14 个新属、36 个新种和 19 个新组合。

分类学新名称

新属——Acicuseptoria Quaedvlieg、Verkley & Crous、Cylindroseptoria Quaedvlieg、Verkley & Crous、Kirstenboschia Quaedvlieg、Verkley & Crous、Neoseptoria Quaedvlieg、Verkley & Crous、Neostagonospora Quaedvlieg、Verkley & Crous、Parastagonospora Quaedvlieg、Verkley & Crous、Polyphialoseptoria Quaedvlieg、R.W. Barreto、Verkley & Crous、Ruptoseptoria Quaedvlieg、Verkley & Crous、Septorioides Quaedvlieg、Verkley & Crous、Setoseptoria Quaedvlieg、Verkley & Crous、Stromatoseptoria Quaedvlieg、Verkley & Crous、Vrystaatia Quaedvlieg、W.J. Swart、Verkley & Crous、Xenobotryosphaeria Quaedvlieg、Verkley & Crous、Xenoseptoria Quaedvlieg、H.D. Shin、Verkley & Crous。新种——Acicuseptoria rumicis Quaedvlieg、Verkley & Crous、Caryophylloseptoria pseudolychnidis Quaedvlieg、H.D. Shin、Verkley & Crous、Coniothyrium sidae Quaedvlieg、Verkley、R.W. Barreto & Crous、Corynespora leucadendri Quaedvlieg、Verkley & Crous、Cylindroseptoria ceratoniae Quaedvlieg、Verkley & Crous、Cylindroseptoria pistaciae Quaedvlieg、Verkley & Crous、Kirstenboschia diospyri Quaedvlieg、Verkley & Crous、Neoseptoria caricis Quaedvlieg、Verkley & Crous、Neostagonospora caricis Quaedvlieg、Verkley & Crous、Neostagonospora elegiae Quaedvlieg、Verkley & Crous、Paraphoma dioscoreae Quaedvlieg、H.D. Shin、Verkley & Crous、Parastagonospora caricis Quaedvlieg、Verkley & Crous、Parastagonospora poae Quaedvlieg、Verkley & Crous、Phlyctema vincetoxici Quaedvlieg、Verkley & Crous、Polyphialoseptoria tabebuiae-serratifoliae Quaedvlieg、Alfenas & Crous、Polyphialoseptoria terminaliae Quaedvlieg、R.W. Barreto、Verkley & Crous、Pseudoseptoria collariana Quaedvlieg、Verkley & Crous、Pseudoseptoria obscura Quaedvlieg、Verkley & Crous、Sclerostagonospora phragmiticola Quaedvlieg、Verkley & Crous、Septoria cretae Quaedvlieg、Verkley & Crous、Septoria glycinicola Quaedvlieg、H.D. Shin、Verkley & Crous、Septoria oenanthicola Quaedvlieg、H.D. Shin、Verkley & Crous、Septoria pseudonapelli Quaedvlieg、H.D. Shin、Verkley & Crous、Setophoma chromolaenae Quaedvlieg、Verkley、R.W. Barreto & Crous、Setoseptoria phragmitis Quaedvlieg、Verkley & Crous、Sphaerulina amelanchier Quaedvlieg、Verkley & Crous、Sphaerulina pseudovirgaureae Quaedvlieg、Verkley & Crous、Sphaerulina viciae Quaedvlieg、H.D. Shin、Verkley & Crous、Stagonospora duoseptata Quaedvlieg、Verkley & Crous、Stagonospora perfecta Quaedvlieg、Verkley & Crous、Stagonospora pseudocaricis Quaedvlieg、Verkley、Gardiennet & Crous、Stagonospora pseudovitensis Quaedvlieg、Verkley & Crous、Stagonospora uniseptata Quaedvlieg、Verkley & Crous、Vrystaatia aloeicola Quaedvlieg、Verkley、W.J. Swart & Crous、Xenobotryosphaeria calamagrostidis Quaedvlieg、Verkley & Crous、Xenoseptoria neosaccardoi Quaedvlieg、H.D. Shin、Verkley & Crous。新组合——Parastagonospora avenae（A.B. Frank）Quaedvlieg、Verkley & Crous、Parastagonospora nodorum（Berk.）Quaedvlieg、Verkley & Crous、Phaeosphaeria papayae（Speg.）Quaedvlieg、Verkley & Crous、Pseudocercospora domingensis（Petr. & Cif.）Quaedvlieg、Verkley & Crous、Ruptoseptoria unedonis（Roberge ex Desm.）Quaedvlieg、Verkley & Crous、Septorioides pini-thunbergii（S. Kaneko）Quaedvlieg、Verkley & Crous、Sphaerulina abeliceae（Hiray.）Quaedvlieg、Verkley & Crous、Sphaerulina azaleae（Voglino）Quaedvlieg、Verkley & Crous、Sphaerulina berberidis（Niessl）Quaedvlieg、Verkley & Crous、Sphaerulina betulae（Pass.）Quaedvlieg、Verkley & Crous、Sphaerulina cercidis（Fr.）Quaedvlieg、Verkley & Crous、Sphaerulina menispermi（Thüm.）Quaedvlieg、Verkley & Crous、Sphaerulina musiva（Peck）Quaedvlieg、Verkley & Crous、Sphaerulina oxyacanthae（Kunze & J.C. Schmidt）Quaedvlieg、Verkley & Crous、Sphaerulina patriniae（Miura）Quaedvlieg、Verkley & Crous、Sphaerulina populicola（Peck）Quaedvlieg、Verkley & Crous、Sphaerulina quercicola（Desm.）Quaedvlieg、Verkley & Crous、Sphaerulina rhabdoclinis（Butin）Quaedvlieg、Verkley & Crous、Stromatoseptoria castaneicola（Desm.）Quaedvlieg、Verkley & Crous。模式种：Phaeosphaeria oryzae I. Miyake、Phaeoseptoria papayae Speg.；Neotype：Hendersonia paludosa Sacc. & Speg.

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