Sert Yusuf, Al-Turkistani Abdulghafoor A, Al-Deeb Omar A, El-Emam Ali A, Ucun Fatih, Çırak Çağrı
Department of Physics, Faculty of Art and Sciences, Bozok University, Yozgat 66100, Turkey.
Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
Spectrochim Acta A Mol Biomol Spectrosc. 2014;120:97-105. doi: 10.1016/j.saa.2013.09.138. Epub 2013 Oct 8.
In this study, the experimental and theoretical vibrational frequencies of a newly synthesized potential chemotherapeutic agent namely, 6-(2-methylpropyl)-4-oxo-2-sulfanylidene-1,2,3,4-tetrahydropyrimidine-5-carbonitrile have been investigated. The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of the molecule in solid phase have been recorded. The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and bond angles) have been calculated by using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr) and M06-2X (the highly parametrized, empirical exchange correlation function) quantum chemical methods with 6-311++G(d,p) basis set by Gaussian 09 W software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis by using VEDA 4 software. The theoretical optimized geometric parameters and vibrational frequencies have been found to be in good agreement with the corresponding experimental data, and with the results in the literature. In addition, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and the other related molecular energy values have been calculated and depicted.
在本研究中,对一种新合成的潜在化疗药物6-(2-甲基丙基)-4-氧代-2-硫代亚烷基-1,2,3,4-四氢嘧啶-5-腈的实验和理论振动频率进行了研究。记录了该分子在固相中的实验傅里叶变换红外光谱(4000 - 400 cm⁻¹)和激光拉曼光谱(4000 - 100 cm⁻¹)。首次使用密度泛函理论(DFT/B3LYP:Becke三参数、Lee-Yang-Parr)和M06-2X(高度参数化的经验交换相关函数)量子化学方法,结合高斯09 W软件的6-311++G(d,p)基组,计算了理论振动频率和优化的几何参数(键长和键角)。通过使用VEDA 4软件进行势能分布(PED)分析完成了振动频率的归属。发现理论优化的几何参数和振动频率与相应的实验数据以及文献中的结果高度吻合。此外,还计算并描绘了最高占据分子轨道(HOMO)和最低未占据分子轨道(LUMO)的能量以及其他相关分子能量值。