Faculty of Advanced Life Science, Hokkaido University , Sapporo 060-0810, Japan.
Biochemistry. 2013 Dec 23;52(51):9257-68. doi: 10.1021/bi401295e. Epub 2013 Dec 12.
Halorhodopsin (HR) is an inward-directed light-driven halogen ion pump, and NpHR is a HR from Natronomonas pharaonis. Unphotolyzed NpHR binds halogen ion in the vicinity of the Schiff base, which links retinal to Lys256. This halogen ion is transported during the photocycle. We made various mutants of Thr218, which is located one half-turn up from the Schiff base to the cytoplasm (CP) channel, and analyzed the photocycle using a sequential irreversible model. Four photochemically defined intermediates (P(i), i = 1-4) were adequate to describe the photocycle. The third component, P₃, was a quasi-equilibrium complex between the N and O intermediates, where a N ↔ O + Cl⁻ equilibrium was attained. The K(d,N↔O) values of this equilibrium for various mutants were determined, and the value of Thr (wild type) was the highest. The partial molar volume differences between N and O, ΔV(N→O), were estimated from the pressure dependence of K(d,N↔O). A comparison between K(d,N↔O) and ΔV(N→O) led to the conclusion that water entry by the F-helix opening at O may occur, which may increase K(d,N↔O). For some mutants, however, large ΔV(N→O) values were found, whereas the K(d,N↔O) values were small. This suggests that the special coordination of a water molecule with the OH group of Thr is necessary for the increase in K(d,N↔O). Mutants with a small K(d,N↔O) showed low pumping activities in the presence of inside negative membrane potential, while the mutant activities were not different in the absence of membrane potential. The effect of the mutation on the pumping activities is discussed.
盐细菌视紫红质(HR)是一种内向的光驱动卤化物离子泵,NpHR 是来自嗜盐古菌的 HR。未光解的 NpHR 在靠近 Schiff 碱的位置结合卤化物离子,Schiff 碱将视黄醛与赖氨酸 256 连接起来。在光循环过程中,这种卤化物离子被运输。我们构建了位于 Schiff 碱到细胞质(CP)通道的一半转角处的苏氨酸 218 的各种突变体,并使用顺序不可逆模型分析了光循环。四个光化学定义的中间体(P(i),i = 1-4)足以描述光循环。第三个组件 P₃是 N 和 O 中间体之间的准平衡复合物,其中达到 N↔O + Cl⁻平衡。确定了各种突变体的这个平衡的 K(d,N↔O)值,并且 Thr(野生型)的值最高。从 K(d,N↔O)对压力的依赖性估算了 N 和 O 之间的偏摩尔体积差 ΔV(N→O)。将 K(d,N↔O)与 ΔV(N→O)进行比较得出结论,F-螺旋在 O 处打开时可能会有水进入,这可能会增加 K(d,N↔O)。然而,对于一些突变体,发现了较大的 ΔV(N→O)值,而 K(d,N↔O)值较小。这表明与 Thr 的 OH 基团的特殊水合对于增加 K(d,N↔O)是必要的。在存在内部负膜电位的情况下,具有小 K(d,N↔O)的突变体显示出低的泵送活性,而在不存在膜电位的情况下,突变体的活性没有差异。讨论了突变对泵送活性的影响。