Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark; Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark; Center for Insoluble Protein Structures (inSPIN), Aarhus University, Aarhus, Denmark.
Proteomics Clin Appl. 2014 Apr;8(3-4):168-77. doi: 10.1002/prca.201300058. Epub 2014 Feb 16.
In this study, we investigated whether the phenotypic difference observed between two lattice corneal dystrophy type 1 (LCD type 1) cases caused by either a single A546D substitution or an A546D/P551Q double substitution in TGFBIp (transforming growth factor beta induced protein) can be ascribed to (i) a difference in the proteomes of corneal amyloid deposits, (ii) altered proteolysis of TGFBIp, or (iii) structural changes of TGFBIp introduced by the P551Q amino acid substitution.
Amyloid deposits were isolated from the corneas of two siblings with LCD type 1 resulting from A546D/P551Q mutations in the TGFBI gene using laser capture microdissection and subsequently analyzed by LC-MS/MS. Proteolytic processing of TGFBIp was addressed by counting peptide spectra. Lastly, to study the possible effect of the P551Q substitution, recombinant FAS1-4 domain variants were subjected to in vitro stability assays.
The amyloid proteomes and TGFBIp processing of the two A546D/P551Q LCD type 1 cases were similar to each other as well as to the A546D amyloid proteome previously reported by us. The stability assays revealed a minor destabilization of the FAS1-4 domain upon the addition of the P551Q mutation, moreover, it resulted in different accessibility to tryptic cleavage sites between the A546D and A546D/P551Q mutant FAS1-4 domain variants.
The difference in A546D and A546D/P551Q LCD type 1 phenotypes cannot be ascribed to altered corneal amyloid composition or altered in vivo proteolytic processing of TGFBIp. Instead, a small difference in thermodynamic stability introduced by the P551Q mutation most likely causes structural changes of TGFBIp. The MS proteomics data have been deposited to the ProteomeXchange with identifier PXD000307 (http://proteomecentral.proteomexchange.org/dataset/PXD000307).
在这项研究中,我们调查了由 TGFBIp(转化生长因子β诱导蛋白)中的单个 A546D 取代或 A546D/P551Q 双取代引起的两种格子状角膜营养不良 1 型(LCD 1 型)病例之间观察到的表型差异是否归因于(i)角膜淀粉样沉积物的蛋白质组差异,(ii)TGFBIp 的蛋白水解改变,或(iii)由 P551Q 氨基酸取代引起的 TGFBIp 结构变化。
使用激光捕获显微切割从两个患有由 TGFBI 基因中的 A546D/P551Q 突变引起的 LCD 1 型的兄弟姐妹的角膜中分离淀粉样沉积物,并使用 LC-MS/MS 进行随后的分析。通过计算肽谱来解决 TGFBIp 的蛋白水解处理问题。最后,为了研究 P551Q 取代的可能影响,对重组 FAS1-4 结构域变体进行了体外稳定性测定。
两个 A546D/P551Q LCD 1 型病例的淀粉样蛋白组和 TGFBIp 处理与我们之前报道的 A546D 淀粉样蛋白组相似。稳定性测定表明,在添加 P551Q 突变时,FAS1-4 结构域的稳定性略有降低,此外,它导致 A546D 和 A546D/P551Q 突变 FAS1-4 结构域变体之间的胰蛋白酶切割位点的可及性不同。
A546D 和 A546D/P551Q LCD 1 型表型的差异不能归因于角膜淀粉样组成的改变或 TGFBIp 的体内蛋白水解处理的改变。相反,由 P551Q 突变引起的热力学稳定性的微小差异很可能导致 TGFBIp 的结构变化。MS 蛋白质组学数据已被存入 ProteomeXchange,标识符为 PXD000307(http://proteomecentral.proteomexchange.org/dataset/PXD000307)。