• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

线性标度 Hartree-Fock 交换能的计算与非正交广义 Wannier 函数。

Linear-scaling calculation of Hartree-Fock exchange energy with non-orthogonal generalised Wannier functions.

机构信息

School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom.

出版信息

J Chem Phys. 2013 Dec 7;139(21):214103. doi: 10.1063/1.4832338.

DOI:10.1063/1.4832338
PMID:24320360
Abstract

We present a method for the calculation of four-centre two-electron repulsion integrals in terms of localised non-orthogonal generalised Wannier functions (NGWFs). Our method has been implemented in the ONETEP program and is used to compute the Hartree-Fock exchange energy component of Hartree-Fock and Density Functional Theory (DFT) calculations with hybrid exchange-correlation functionals. As the NGWFs are optimised in situ in terms of a systematically improvable basis set which is equivalent to plane waves, it is possible to achieve large basis set accuracy in routine calculations. The spatial localisation of the NGWFs allows us to exploit the exponential decay of the density matrix in systems with a band gap in order to compute the exchange energy with a computational effort that increases linearly with the number of atoms. We describe the implementation of this approach in the ONETEP program for linear-scaling first principles quantum mechanical calculations. We present extensive numerical validation of all the steps in our method. Furthermore, we find excellent agreement in energies and structures for a wide variety of molecules when comparing with other codes. We use our method to perform calculations with the B3LYP exchange-correlation functional for models of myoglobin systems bound with O2 and CO ligands and confirm that the same qualitative behaviour is obtained as when the same myoglobin models are studied with the DFT+U approach which is also available in ONETEP. Finally, we confirm the linear-scaling capability of our method by performing calculations on polyethylene and polyacetylene chains of increasing length.

摘要

我们提出了一种基于局域非正交广义 Wannier 函数(NGWFs)计算四中心双电子排斥积分的方法。我们的方法已经在 ONETEP 程序中实现,并用于计算具有混合交换相关泛函的 Hartree-Fock 和密度泛函理论(DFT)计算的 Hartree-Fock 交换能分量。由于 NGWFs 是根据等效于平面波的系统地可改进基组就地优化的,因此可以在常规计算中实现大基组精度。NGWFs 的空间局域化允许我们利用具有带隙的系统中密度矩阵的指数衰减来计算交换能,而计算工作量随原子数线性增加。我们描述了在 ONETEP 程序中实现这种方法的情况,以进行线性标度第一性原理量子力学计算。我们对我们方法的所有步骤进行了广泛的数值验证。此外,当与其他代码进行比较时,我们发现对于各种分子,在能量和结构方面都非常吻合。我们使用我们的方法对与 O2 和 CO 配体结合的肌红蛋白系统的 B3LYP 交换相关泛函进行计算,并确认当使用同样的肌红蛋白模型与 ONETEP 中也可用的 DFT+U 方法进行研究时,得到了相同的定性行为。最后,我们通过对越来越长的聚乙烯和聚乙炔链进行计算,确认了我们方法的线性标度能力。

相似文献

1
Linear-scaling calculation of Hartree-Fock exchange energy with non-orthogonal generalised Wannier functions.线性标度 Hartree-Fock 交换能的计算与非正交广义 Wannier 函数。
J Chem Phys. 2013 Dec 7;139(21):214103. doi: 10.1063/1.4832338.
2
Massively parallel linear-scaling Hartree-Fock exchange and hybrid exchange-correlation functionals with plane wave basis set accuracy.具有平面波基组精度的大规模并行线性缩放哈特里-福克交换及杂化交换关联泛函。
J Chem Phys. 2021 Dec 14;155(22):224106. doi: 10.1063/5.0067781.
3
The ONETEP linear-scaling density functional theory program.ONETEP线性标度密度泛函理论程序。
J Chem Phys. 2020 May 7;152(17):174111. doi: 10.1063/5.0004445.
4
Self-consistent implementation of meta-GGA functionals for the ONETEP linear-scaling electronic structure package.用于ONETEP线性标度电子结构软件包的元广义梯度近似泛函的自洽实现。
J Chem Phys. 2016 Nov 28;145(20):204114. doi: 10.1063/1.4967960.
5
Exact exchange with non-orthogonal generalized Wannier functions.非正交广义 Wannier 函数的精确交换。
J Chem Phys. 2017 Mar 14;146(10):104108. doi: 10.1063/1.4977783.
6
A density matrix-based method for the linear-scaling calculation of dynamic second- and third-order properties at the Hartree-Fock and Kohn-Sham density functional theory levels.一种基于密度矩阵的方法,用于在Hartree-Fock和Kohn-Sham密度泛函理论水平下对动态二阶和三阶性质进行线性标度计算。
J Chem Phys. 2007 Nov 28;127(20):204103. doi: 10.1063/1.2794033.
7
Introducing ONETEP: linear-scaling density functional simulations on parallel computers.介绍ONETEP:并行计算机上的线性标度密度泛函模拟。
J Chem Phys. 2005 Feb 22;122(8):84119. doi: 10.1063/1.1839852.
8
Intermolecular potentials of the silane dimer calculated with Hartree-Fock theory, Møller-Plesset perturbation theory, and density functional theory.用哈特里-福克理论、莫勒-普莱斯微扰理论和密度泛函理论计算的硅烷二聚体的分子间势。
J Phys Chem A. 2007 Nov 22;111(46):11922-9. doi: 10.1021/jp0752973. Epub 2007 Oct 27.
9
Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).第二届理论与产业研讨会会议录(2007年6月12日至14日,奥地利维也纳埃尔温·薛定谔研究所)
J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.
10
Parallel and Low-Order Scaling Implementation of Hartree-Fock Exchange Using Local Density Fitting.使用局域密度拟合的哈特里-福克交换的并行和低阶缩放实现
J Chem Theory Comput. 2016 Jul 12;12(7):3122-34. doi: 10.1021/acs.jctc.6b00251. Epub 2016 Jun 27.

引用本文的文献

1
Efficiently Computing Excitations of Complex Systems: Linear-Scaling Time-Dependent Embedded Mean-Field Theory in Implicit Solvent.高效计算复杂系统的激发态:隐式溶剂中线性标度含时嵌入平均场理论
J Chem Theory Comput. 2022 Mar 8;18(3):1542-1554. doi: 10.1021/acs.jctc.1c01133. Epub 2022 Feb 8.
2
Development and Validation of the Quantum Mechanical Bespoke Protein Force Field.量子力学定制蛋白质力场的开发与验证。
ACS Omega. 2019 Aug 27;4(11):14537-14550. doi: 10.1021/acsomega.9b01769. eCollection 2019 Sep 10.