3'-O-荧光单修饰可逆终止子的合成及其在合成测序中的应用。

Synthesis of 3'-O-fluorescently mono-modified reversible terminators and their uses in sequencing-by-synthesis.

机构信息

Center for Theragnosis, Korea Institute of Science and Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul 136-791, Republic of Korea.

College of Pharmacy, Gachon University, 191 Hambakmoero, Yoensu-Gu, Incheon, Republic of Korea.

出版信息

Bioorg Med Chem Lett. 2014 Jan 1;24(1):209-13. doi: 10.1016/j.bmcl.2013.11.040. Epub 2013 Nov 25.

Abstract

Next-generation sequencing (NGS) technologies recently developed are now used for study of genomes from various organisms. Sequencing-by-synthesis (SBS) is a key strategy in the NGS. The SBS uses nucleotides so-called dual-modified reversible terminators (DRTs) in which bases are labeled with fluorophores and 3'-OH is protected with a reversibly cleavable chemical group, respectively. In this study, we examined the possibility of performing SBS with mono-modified reversible terminators (MRTs), in which the reversible blocking group on the 3'-OH plays a dual role as a fluorescent signal report as well as a chemical protection. We studied cyclic reversible termination by using two MRTs (dA and dT), wherein the modifications were two different fluorophores and cleavable to regenerate a free 3'-OH. We here demonstrated that SBS could be achieved with incorporation of MRTs by a DNA polymerase and correct base-calls based on the two different colors from the fluorophores.

摘要

下一代测序(NGS)技术最近得到了发展,现在被用于研究各种生物体的基因组。测序合成(SBS)是 NGS 的关键策略。SBS 使用核苷酸,即所谓的双修饰可逆终止子(DRTs),其中碱基用荧光团标记,3'-OH 分别用可还原裂解的化学基团保护。在这项研究中,我们研究了使用单修饰可逆终止子(MRTs)进行 SBS 的可能性,其中 3'-OH 上的可逆封锁基团同时充当荧光信号报告和化学保护的双重作用。我们使用两种 MRT(dA 和 dT)研究了循环可逆终止,其中修饰是两种不同的荧光团,并可裂解以再生游离的 3'-OH。我们在这里证明,通过 DNA 聚合酶掺入 MRT 可以实现 SBS,并基于荧光团的两种不同颜色进行正确的碱基呼叫。

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