Institute of Chemistry and Biochemistry, Freie Universität Berlin , Takustraße 3, 14195 Berlin, Germany.
ACS Chem Biol. 2014 Mar 21;9(3):613-6. doi: 10.1021/cb4007979. Epub 2014 Jan 10.
The substitution of α-amino acids by homologated amino acids has a strong impact on the overall structure and topology of peptides, usually leading to a loss in thermal stability. Here, we report on the identification of an ideal core packing between an α-helical peptide and an αβγ-chimera via phage display. Selected peptides assemble with the chimeric sequence with thermal stabilities that are comparable to that of the parent bundle consisting purely of α-amino acids. With the help of MD simulations and mutational analysis this stability could be explained by the formation of an interhelical H-bond between the selected cysteine and a backbone carbonyl of the β/γ-segment. Gained results can be directly applied in the design of biologically relevant peptides containing β- and γ-amino acids.
用同系氨基酸替代α-氨基酸会对肽的整体结构和拓扑结构产生强烈影响,通常会导致热稳定性丧失。在这里,我们通过噬菌体展示报告了在α-螺旋肽和αβγ-嵌合体之间发现的理想核心包装。通过选择的肽与嵌合序列组装,其热稳定性可与由纯α-氨基酸组成的母体束相媲美。借助 MD 模拟和突变分析,可以通过在所选半胱氨酸和β/γ 片段的骨架羰基之间形成的螺旋内氢键来解释这种稳定性。获得的结果可以直接应用于设计含有β-和γ-氨基酸的生物相关肽。