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细菌 RNA 聚合酶:结构与功能关系。

Bacterial RNA polymerases: structural and functional relationships.

机构信息

Department of Biochemistry, University of Nottingham Medical School, Queen's Medical Centre, NG7 2UH, Nottingham, UK.

出版信息

World J Microbiol Biotechnol. 1993 Jul;9(4):403-13. doi: 10.1007/BF00328028.

DOI:10.1007/BF00328028
PMID:24420107
Abstract

The essential role of DNA-dependent RNA polymerases in gene expression and the fact that the multimeric species are highly conserved throughout nature makes these enzymes a particular fascinating area of study. Here we shall review the conservation of structures and their relationship to function, especially in the multimeric eubacterial RNA polymerases, paying particular attention to the β core subunit and to recent studies of σ-factors of both the σ (70) and σ (54) families. We shall conclude with a brief consideration of phage-encoded RNA polymerases and phage-mediated modification of the host enzyme, and of the evolution of RNA-synthesising enzymes.

摘要

DNA 依赖性 RNA 聚合酶在基因表达中的重要作用,以及多聚体物种在自然界中高度保守这一事实,使得这些酶成为一个特别引人入胜的研究领域。在这里,我们将回顾结构的保守性及其与功能的关系,特别是在多聚体原核 RNA 聚合酶中,特别关注β核心亚基以及最近对σ(70)和σ(54)家族的σ因子的研究。最后,我们将简要考虑噬菌体编码的 RNA 聚合酶和噬菌体介导的对宿主酶的修饰,以及 RNA 合成酶的进化。

相似文献

1
Bacterial RNA polymerases: structural and functional relationships.细菌 RNA 聚合酶:结构与功能关系。
World J Microbiol Biotechnol. 1993 Jul;9(4):403-13. doi: 10.1007/BF00328028.
2
Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases.依赖DNA的RNA聚合酶催化亚基与真核生物依赖RNA的RNA聚合酶之间的进化联系以及RNA聚合酶的起源
BMC Struct Biol. 2003 Jan 28;3:1. doi: 10.1186/1472-6807-3-1.
3
Evolution of plant phage-type RNA polymerases: the genome of the basal angiosperm Nuphar advena encodes two mitochondrial and one plastid phage-type RNA polymerases.植物噬菌体 RNA 聚合酶的进化:基生被子植物水鳖的基因组编码两个线粒体和一个质体噬菌体 RNA 聚合酶。
BMC Evol Biol. 2010 Dec 6;10:379. doi: 10.1186/1471-2148-10-379.
4
Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?质体 σ 因子在高等植物中的功能:调控基因表达还是仅仅维持组成型转录?
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Trans-dominant mutations in the 3'-terminal region of the rpoB gene define highly conserved, essential residues in the beta subunit of RNA polymerase: the GEME motif.rpoB基因3'末端区域的反式显性突变确定了RNA聚合酶β亚基中高度保守的必需残基:GEME基序。
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Mitochondrial transcription initiation: promoter structures and RNA polymerases.线粒体转录起始:启动子结构与RNA聚合酶
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A deep phylogeny of viral and cellular right-hand polymerases.病毒和细胞右手聚合酶的深度系统发育
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引用本文的文献

1
The RNA polymerase alpha subunit from Sinorhizobium meliloti can assemble with RNA polymerase subunits from Escherichia coli and function in basal and activated transcription both in vivo and in vitro.来自苜蓿中华根瘤菌的RNA聚合酶α亚基可与来自大肠杆菌的RNA聚合酶亚基组装,并在体内和体外的基础转录和激活转录中发挥作用。
J Bacteriol. 2002 Jul;184(14):3808-14. doi: 10.1128/JB.184.14.3808-3814.2002.

本文引用的文献

1
Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.大肠杆菌中主要σ因子的异质性:rpoS基因产物σ38是静止期大肠杆菌中RNA聚合酶的第二个主要σ因子。
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3511-5. doi: 10.1073/pnas.90.8.3511.
2
Role of the sigma 70 subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli.RNA聚合酶的σ70亚基在大肠杆菌中激活蛋白PhoB介导的转录激活中的作用。
Genes Dev. 1993 Jan;7(1):149-60. doi: 10.1101/gad.7.1.149.
3
Genetic studies on the beta subunit of Escherichia coli RNA polymerase. IV. Structure-function correlates.
大肠杆菌RNA聚合酶β亚基的遗传学研究。IV. 结构-功能相关性
Mol Gen Genet. 1984;194(1-2):166-72. doi: 10.1007/BF00383512.
4
Promoter selectivity of Escherichia coli RNA polymerase. II: Altered promoter selection by mutant holoenzymes.大肠杆菌RNA聚合酶的启动子选择性。II:突变全酶对启动子选择的改变
Mol Gen Genet. 1984;193(1):8-16. doi: 10.1007/BF00327407.
5
Isolation of bacterial and bacteriophage RNA polymerases and their use in synthesis of RNA in vitro.细菌和噬菌体RNA聚合酶的分离及其在体外RNA合成中的应用。
Methods Enzymol. 1983;101:540-68. doi: 10.1016/0076-6879(83)01037-x.
6
Purification and characterization of coliphage N4 RNA polymerase II activity from infected cell extracts.从感染细胞提取物中纯化及鉴定大肠杆菌噬菌体N4 RNA聚合酶II活性
J Biol Chem. 1983 Jul 10;258(13):8074-80.
7
Coliphage-induced ADP-ribosylation of Escherichia coli RNA polymerase.大肠杆菌噬菌体诱导的大肠杆菌RNA聚合酶的ADP核糖基化作用。
Methods Enzymol. 1984;106:418-29. doi: 10.1016/0076-6879(84)06045-6.
8
RNA polymerase.RNA聚合酶
Annu Rev Biochem. 1971;40:711-40. doi: 10.1146/annurev.bi.40.070171.003431.
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Factor stimulating transcription by RNA polymerase.刺激RNA聚合酶转录的因子。
Nature. 1969 Jan 4;221(5175):43-6. doi: 10.1038/221043a0.
10
Comparative size and properties of the sigma subunits of ribonucleic acid polymerase from Bacillus subtilis and Escherichia coli.枯草芽孢杆菌和大肠杆菌核糖核酸聚合酶σ亚基的比较大小与性质
J Biol Chem. 1973 Sep 10;248(17):6170-3.