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作为次优温度函数的微生物生长模型判别中的最优实验设计

Optimal experimental design for discriminating between microbial growth models as function of suboptimal temperature.

作者信息

Stamati I, Logist F, Van Derlinden E, Gauchi J-P, Van Impe J

机构信息

BioTeC & OPTEC, Chemical Engineering Department, KU Leuven, W. de Croylaan 46, 3001 Leuven, Belgium.

Unité MIA (UR341), INRA, Domaine de Vilvert, 78352 Jouy en Josas, France.

出版信息

Math Biosci. 2014 Apr;250:69-80. doi: 10.1016/j.mbs.2014.01.006. Epub 2014 Jan 27.

Abstract

In the field of predictive microbiology, mathematical models play an important role for describing microbial growth, survival and inactivation. Often different models are available for describing the microbial dynamics in a similar way. However, the model that describes the system in the best way is desired. Optimal experimental design for model discrimination (OED-MD) is an efficient tool for discriminating among rival models. In this work the T12-criterion proposed by Atkinson and Fedorov (1975) [1] and applied efficiently by Ucinski and Bogacka (2005) [2] and the Schwaab-approach proposed by Schwaab et al. (2008) [3] and Donckels et al. (2009) [4] will be applied for discriminating among rival models for the microbial growth rate as a function of temperature. The two methods will be tested in silico and their performances will be compared. Results from a simulation study indicate that it is possible to validate the case that one of the proposed models is more accurate for describing the temperature effect on the microbial growth rate. Both methods are able to design inputs with a sufficient discrimination potential. However, it has been observed that the Schwaab-approach provides inputs with a higher discrimination potential in combination with more accurate parameter estimates.

摘要

在预测微生物学领域,数学模型在描述微生物生长、存活和失活方面发挥着重要作用。通常有不同的模型可用于以类似方式描述微生物动态。然而,人们希望找到能以最佳方式描述该系统的模型。用于模型判别(OED-MD)的最优实验设计是区分竞争模型的有效工具。在这项工作中,将应用由阿特金森和费多罗夫(1975年)[1]提出并由乌辛斯基和博加茨卡(2005年)[2]有效应用的T12准则,以及由施瓦布等人(2008年)[3]和唐克尔斯等人(2009年)[4]提出的施瓦布方法,来区分作为温度函数的微生物生长速率的竞争模型。将对这两种方法进行计算机模拟测试并比较它们的性能。一项模拟研究的结果表明,有可能验证所提出的模型之一在描述温度对微生物生长速率的影响方面更准确的情况。两种方法都能够设计出具有足够判别潜力的输入。然而,据观察,施瓦布方法结合更准确的参数估计提供了具有更高判别潜力的输入。

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