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金属肽酶催化结构域的结构与功能

Architecture and function of metallopeptidase catalytic domains.

作者信息

Cerdà-Costa Núria, Gomis-Rüth Francesc Xavier

出版信息

Protein Sci. 2014 Feb;23(2):123-44. doi: 10.1002/pro.2400.

Abstract

The cleavage of peptide bonds by metallopeptidases (MPs) is essential for life. These ubiquitous enzymes participate in all major physiological processes, and so their deregulation leads to diseases ranging from cancer and metastasis, inflammation, and microbial infection to neurological insults and cardiovascular disorders. MPs cleave their substrates without a covalent intermediate in a single-step reaction involving a solvent molecule, a general base/acid, and a mono- or dinuclear catalytic metal site. Most monometallic MPs comprise a short metal-binding motif (HEXXH), which includes two metal-binding histidines and a general base/acid glutamate, and they are grouped into the zincin tribe of MPs. The latter divides mainly into the gluzincin and metzincin clans. Metzincins consist of globular ∼ 130-270-residue catalytic domains, which are usually preceded by N-terminal pro-segments, typically required for folding and latency maintenance. The catalytic domains are often followed by C-terminal domains for substrate recognition and other protein-protein interactions, anchoring to membranes, oligomerization, and compartmentalization. Metzincin catalytic domains consist of a structurally conserved N-terminal subdomain spanning a five-stranded β-sheet, a backing helix, and an active-site helix. The latter contains most of the metal-binding motif, which is here characteristically extended to HEXXHXXGXX(H,D). Downstream C-terminal subdomains are generally shorter, differ more among metzincins, and mainly share a conserved loop--the Met-turn--and a C-terminal helix. The accumulated structural data from more than 300 deposited structures of the 12 currently characterized metzincin families reviewed here provide detailed knowledge of the molecular features of their catalytic domains, help in our understanding of their working mechanisms, and form the basis for the design of novel drugs.

摘要

金属肽酶(MPs)对肽键的切割对生命至关重要。这些普遍存在的酶参与所有主要的生理过程,因此它们的失调会导致从癌症、转移、炎症、微生物感染到神经损伤和心血管疾病等各种疾病。MPs在涉及溶剂分子、一般碱/酸和单核或双核催化金属位点的单步反应中切割其底物,且无共价中间体。大多数单金属MPs包含一个短的金属结合基序(HEXXH),其中包括两个金属结合组氨酸和一个一般碱/酸谷氨酸,它们被归类为MPs的锌指族。后者主要分为谷锌指和金属锌指家族。金属锌指由约130 - 270个残基的球状催化结构域组成,其前面通常有N端前肽段,这通常是折叠和维持潜伏性所必需的。催化结构域后面常常跟着C端结构域,用于底物识别和其他蛋白质 - 蛋白质相互作用、锚定到膜上、寡聚化和区室化。金属锌指催化结构域由一个结构保守的N端亚结构域组成,该亚结构域跨越一个五链β - 折叠、一个支撑螺旋和一个活性位点螺旋。后者包含大部分金属结合基序,在此其特征性地扩展为HEXXHXXGXX(H,D)。下游的C端亚结构域通常较短,在金属锌指之间差异更大,并且主要共享一个保守环——甲硫氨酸转角——和一个C端螺旋。本文综述的12个目前已表征的金属锌指家族的300多个已存结构的累积结构数据,提供了其催化结构域分子特征的详细知识,有助于我们理解其作用机制,并为新型药物的设计奠定基础。

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