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濒危的东部箱龟指名亚种(Terrapene c. carolina)种群遗传结构在整个分布范围内出乎意料地低。

Unexpectedly low rangewide population genetic structure of the imperiled eastern box turtle Terrapene c. carolina.

作者信息

Kimble Steven J A, Rhodes O E, Williams Rod N

机构信息

Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, United States of America.

Savannah River Ecology Laboratory, Aiken, South Carolina, United States of America.

出版信息

PLoS One. 2014 Mar 19;9(3):e92274. doi: 10.1371/journal.pone.0092274. eCollection 2014.

Abstract

Rangewide studies of genetic parameters can elucidate patterns and processes that operate only over large geographic scales. Herein, we present a rangewide population genetic assessment of the eastern box turtle Terrapene c. carolina, a species that is in steep decline across its range. To inform conservation planning for this species, we address the hypothesis that disruptions to demographic and movement parameters associated with the decline of the eastern box turtle has resulted in distinctive genetic signatures in the form of low genetic diversity, high population structuring, and decreased gene flow. We used microsatellite genotype data from (n = 799) individuals from across the species range to perform two Bayesian population assignment approaches, two methods for comparing historical and contemporary migration among populations, an evaluation of isolation by distance, and a method for detecting barriers to gene flow. Both Bayesian methods of population assignment indicated that there are two populations rangewide, both of which have maintained high levels of genetic diversity (HO = 0.756). Evidence of isolation by distance was detected in this species at a spatial scale of 300-500 km, and the Appalachian Mountains were identified as the primary barrier to gene flow across the species range. We also found evidence for historical but not contemporary migration between populations. Our prediction of many, highly structured populations across the range was not supported. This may point to cryptic contemporary gene flow, which might in turn be explained by the presence of rare transients in populations. However these data may be influenced by historical signatures of genetic connectivity because individuals of this species can be long-lived.

摘要

对遗传参数进行全范围研究可以阐明仅在大地理尺度上起作用的模式和过程。在此,我们对东部箱龟Terrapene c. carolina进行了全范围的种群遗传评估,该物种在其分布范围内数量急剧下降。为了为该物种的保护规划提供信息,我们探讨了这样一个假设:与东部箱龟数量下降相关的人口统计学和迁移参数的破坏导致了独特的遗传特征,表现为低遗传多样性、高种群结构和基因流减少。我们使用了来自该物种分布范围内(n = 799)个体的微卫星基因型数据,进行了两种贝叶斯种群分配方法、两种比较种群间历史和当代迁移的方法、距离隔离评估以及一种检测基因流障碍的方法。两种贝叶斯种群分配方法均表明,在全范围内存在两个种群,且两个种群都保持了较高水平的遗传多样性(HO = 0.756)。在该物种中,在300 - 500公里的空间尺度上检测到了距离隔离的证据,并且阿巴拉契亚山脉被确定为该物种分布范围内基因流的主要障碍。我们还发现了种群间历史迁移而非当代迁移的证据。我们关于整个分布范围内存在许多高度结构化种群的预测未得到支持。这可能指向隐秘的当代基因流,这反过来可能由种群中罕见的短暂个体的存在来解释。然而,这些数据可能受到遗传连通性历史特征的影响,因为该物种的个体寿命较长。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/22a5/3960240/460d10d541bc/pone.0092274.g001.jpg

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