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从桔小实蝇(Bactrocera dorsalis)脂肪体中对与免疫、解毒和能量代谢相关基因进行从头克隆和注释。

De novo cloning and annotation of genes associated with immunity, detoxification and energy metabolism from the fat body of the oriental fruit fly, Bactrocera dorsalis.

作者信息

Yang Wen-Jia, Yuan Guo-Rui, Cong Lin, Xie Yi-Fei, Wang Jin-Jun

机构信息

Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China.

出版信息

PLoS One. 2014 Apr 7;9(4):e94470. doi: 10.1371/journal.pone.0094470. eCollection 2014.

Abstract

The oriental fruit fly, Bactrocera dorsalis, is a destructive pest in tropical and subtropical areas. In this study, we performed transcriptome-wide analysis of the fat body of B. dorsalis and obtained more than 59 million sequencing reads, which were assembled into 27,787 unigenes with an average length of 591 bp. Among them, 17,442 (62.8%) unigenes matched known proteins in the NCBI database. The assembled sequences were further annotated with gene ontology, cluster of orthologous group terms, and Kyoto encyclopedia of genes and genomes. In depth analysis was performed to identify genes putatively involved in immunity, detoxification, and energy metabolism. Many new genes were identified including serpins, peptidoglycan recognition proteins and defensins, which were potentially linked to immune defense. Many detoxification genes were identified, including cytochrome P450s, glutathione S-transferases and ATP-binding cassette (ABC) transporters. Many new transcripts possibly involved in energy metabolism, including fatty acid desaturases, lipases, alpha amylases, and trehalose-6-phosphate synthases, were identified. Moreover, we randomly selected some genes to examine their expression patterns in different tissues by quantitative real-time PCR, which indicated that some genes exhibited fat body-specific expression in B. dorsalis. The identification of a numerous transcripts in the fat body of B. dorsalis laid the foundation for future studies on the functions of these genes.

摘要

桔小实蝇(Bactrocera dorsalis)是热带和亚热带地区的一种毁灭性害虫。在本研究中,我们对桔小实蝇的脂肪体进行了全转录组分析,获得了超过5900万个测序读数,这些读数被组装成27787个单基因,平均长度为591 bp。其中,17442个(62.8%)单基因与NCBI数据库中的已知蛋白质匹配。对组装后的序列进一步用基因本体论、直系同源簇术语和京都基因与基因组百科全书进行注释。进行了深入分析以鉴定可能参与免疫、解毒和能量代谢的基因。鉴定出了许多新基因,包括丝氨酸蛋白酶抑制剂、肽聚糖识别蛋白和防御素,它们可能与免疫防御有关。鉴定出了许多解毒基因,包括细胞色素P450、谷胱甘肽S-转移酶和ATP结合盒(ABC)转运蛋白。鉴定出了许多可能参与能量代谢的新转录本,包括脂肪酸去饱和酶、脂肪酶、α淀粉酶和海藻糖-6-磷酸合酶。此外,我们通过定量实时PCR随机选择了一些基因来检测它们在不同组织中的表达模式,结果表明一些基因在桔小实蝇中表现出脂肪体特异性表达。桔小实蝇脂肪体中大量转录本的鉴定为今后研究这些基因的功能奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05df/3978049/a2de3065a98a/pone.0094470.g001.jpg

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