Kanoh Yoshitaka, Uehara Seiichiroh, Iwata Hideyuki, Yoneda Kazunari, Ohshima Toshihisa, Sakuraba Haruhiko
Department of Applied Biological Science, Faculty of Agriculture, Kagawa University, 2393 Ikenobe, Miki-cho, Kita-gun, Kagawa 761-0795, Japan.
Thermostable Enzyme Laboratory, 5-5-2 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan.
Acta Crystallogr D Biol Crystallogr. 2014 May;70(Pt 5):1271-80. doi: 10.1107/S1399004714002363. Epub 2014 Apr 29.
Glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium (tvGlcDH) is highly active towards D-glucose and D-galactose, but does not utilize aldopentoses such as D-xylose as substrates. In the present study, the crystal structures of substrate/cofactor-free tvGlcDH and of a tvGlcDH T277F mutant in a binary complex with NADP and in a ternary complex with D-glucose and nicotinic acid adenine dinucleotide phosphate, an NADP analogue, were determined at resolutions of 2.6, 2.25 and 2.33 Å, respectively. The overall structure of each monomer showed notable similarity to that of the enzyme from Sulfolobus solfataricus (ssGlcDH-1), which accepts a broad range of C5 and C6 sugars as substrates. However, the amino-acid residues of tvGlcDH involved in substrate binding markedly differed from those of ssGlcDH-1. Structural comparison revealed that a decreased number of interactions between the C3-hydroxyl group of the sugar and the enzyme are likely to be responsible for the lack of reactivity of tvGlcDH towards D-xylose.
嗜热嗜酸古菌火山栖热原体(Thermoplasma volcanium)的葡萄糖脱氢酶(tvGlcDH)对D-葡萄糖和D-半乳糖具有高活性,但不利用诸如D-木糖等戊醛糖作为底物。在本研究中,分别以2.6 Å、2.25 Å和2.33 Å的分辨率测定了无底物/辅因子的tvGlcDH以及与NADP形成二元复合物和与D-葡萄糖及烟酰胺腺嘌呤二核苷酸磷酸(一种NADP类似物)形成三元复合物的tvGlcDH T277F突变体的晶体结构。每个单体的整体结构与嗜酸热硫化叶菌(Sulfolobus solfataricus)的酶(ssGlcDH-1)的结构显示出显著相似性,后者可接受多种C5和C6糖类作为底物。然而,tvGlcDH中参与底物结合的氨基酸残基与ssGlcDH-1的明显不同。结构比较表明,糖类C3-羟基与酶之间相互作用数量的减少可能是tvGlcDH对D-木糖缺乏反应性的原因。