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在拟南芥雄性配子体中表达的 F-box 蛋白基因的功能冗余和/或持续假基因化。

Functional redundancy and/or ongoing pseudogenization among F-box protein genes expressed in Arabidopsis male gametophyte.

机构信息

Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech, Route de Saint-Cyr (RD 10), 78026, Versailles Cedex, France.

出版信息

Plant Reprod. 2014 Jun;27(2):95-107. doi: 10.1007/s00497-014-0243-1. Epub 2014 May 13.

Abstract

F-box protein genes family is one of the largest gene families in plants, with almost 700 predicted genes in the model plant Arabidopsis. F-box proteins are key components of the ubiquitin proteasome system that allows targeted protein degradation. Transcriptome analyses indicate that half of these F-box protein genes are found expressed in microspore and/or pollen, i.e., during male gametogenesis. To assess the role of F-box protein genes during this crucial developmental step, we selected 34 F-box protein genes recorded as highly and specifically expressed in pollen and isolated corresponding insertion mutants. We checked the expression level of each selected gene by RT-PCR and confirmed pollen expression for 25 genes, but specific expression for only 10 of the 34 F-box protein genes. In addition, we tested the expression level of selected F-box protein genes in 24 mutant lines and showed that 11 of them were null mutants. Transmission analysis of the mutations to the progeny showed that none of the single mutations was gametophytic lethal. These unaffected transmission efficiencies suggested leaky mutations or functional redundancy among F-box protein genes. Cytological observation of the gametophytes in the mutants confirmed these results. Combinations of mutations in F-box protein genes from the same subfamily did not lead to transmission defect either, further highlighting functional redundancy and/or a high proportion of pseudogenes among these F-box protein genes.

摘要

F-box 蛋白基因家族是植物中最大的基因家族之一,在模式植物拟南芥中,大约有 700 个预测基因。F-box 蛋白是泛素蛋白酶体系统的关键组成部分,允许靶向蛋白质降解。转录组分析表明,这些 F-box 蛋白基因中有一半在小孢子和/或花粉中表达,即在雄性配子体发生过程中。为了评估 F-box 蛋白基因在这个关键发育阶段的作用,我们选择了 34 个在花粉中高度特异性表达的 F-box 蛋白基因,并分离了相应的插入突变体。我们通过 RT-PCR 检查了每个选定基因的表达水平,并确认了 25 个基因在花粉中表达,但只有 34 个 F-box 蛋白基因中的 10 个具有特异性表达。此外,我们还测试了 24 个突变系中选定的 F-box 蛋白基因的表达水平,结果表明其中 11 个是缺失突变体。对突变体向后代的传递分析表明,这些突变没有一个是配子体致死的。这些不受影响的传递效率表明 F-box 蛋白基因之间存在渗漏突变或功能冗余。对突变体中配子体的细胞学观察证实了这些结果。来自同一亚家族的 F-box 蛋白基因突变的组合也没有导致传递缺陷,进一步强调了这些 F-box 蛋白基因之间的功能冗余和/或高比例的假基因。

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