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胚胎干细胞中的异常DNA甲基化。

Aberrant DNA methylation in ES cells.

作者信息

Ludwig Guy, Nejman Deborah, Hecht Merav, Orlanski Shari, Abu-Remaileh Monther, Yanuka Ofra, Sandler Oded, Marx Amichai, Roberts Douglas, Benvenisty Nissim, Bergman Yehudit, Mendelsohn Monica, Cedar Howard

机构信息

Department of Developmental Biology and Cancer Research, The Hebrew University-Hadassah Medical School, Jerusalem, Israel.

Department of Genetics, Silberman Institute of Life Sciences, The Hebrew University, Jerusalem, Israel.

出版信息

PLoS One. 2014 May 22;9(5):e96090. doi: 10.1371/journal.pone.0096090. eCollection 2014.

DOI:10.1371/journal.pone.0096090
PMID:24852222
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4031077/
Abstract

Both mouse and human embryonic stem cells can be differentiated in vitro to produce a variety of somatic cell types. Using a new developmental tracing approach, we show that these cells are subject to massive aberrant CpG island de novo methylation that is exacerbated by differentiation in vitro. Bioinformatics analysis indicates that there are two distinct forms of abnormal de novo methylation, global as opposed to targeted, and in each case the resulting pattern is determined by molecular rules correlated with local pre-existing histone modification profiles. Since much of the abnormal methylation generated in vitro appears to be stably maintained, this modification may inhibit normal differentiation and could predispose to cancer if cells are used for replacement therapy. Excess CpG island methylation is also observed in normal placenta, suggesting that this process may be governed by an inherent program.

摘要

小鼠和人类胚胎干细胞均可在体外分化产生多种体细胞类型。利用一种新的发育追踪方法,我们发现这些细胞会发生大量异常的从头CpG岛甲基化,且体外分化会加剧这种现象。生物信息学分析表明,存在两种不同形式的异常从头甲基化,即全局型与靶向型,并且在每种情况下,所产生的模式均由与局部预先存在的组蛋白修饰谱相关的分子规则决定。由于体外产生的许多异常甲基化似乎能稳定维持,这种修饰可能会抑制正常分化,并且如果将这些细胞用于替代疗法,可能会引发癌症。在正常胎盘中也观察到了过量的CpG岛甲基化,这表明该过程可能受固有程序调控。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/2adee6fc8465/pone.0096090.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/bde5e80f8ad9/pone.0096090.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/386405b7163c/pone.0096090.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/a248cfdc5185/pone.0096090.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/2adee6fc8465/pone.0096090.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/bde5e80f8ad9/pone.0096090.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/386405b7163c/pone.0096090.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/a248cfdc5185/pone.0096090.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5a/4031077/2adee6fc8465/pone.0096090.g004.jpg

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本文引用的文献

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Establishment of methylation patterns in ES cells.建立 ES 细胞中的甲基化模式。
Nat Struct Mol Biol. 2014 Jan;21(1):110-2. doi: 10.1038/nsmb.2734. Epub 2013 Dec 15.
2
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.FGF 信号抑制可促使胚胎干细胞快速进行全基因组去甲基化,达到多能性的表观遗传基础状态。
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Naive pluripotency is associated with global DNA hypomethylation.原始的多能性与全球 DNA 低甲基化有关。
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Epigenetic Regulation of Cellular Senescence and Aging.细胞衰老与老化的表观遗传调控
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Hypomethylation and Genetic Instability in Monosomy Blastocysts May Contribute to Decreased Implantation Potential.单倍体囊胚中的低甲基化和基因不稳定可能导致着床潜力降低。
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Achilles' heel of pluripotent stem cells: genetic, genomic and epigenetic variations during prolonged culture.多能干细胞的致命弱点:长期培养过程中的遗传、基因组和表观遗传变异
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Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development.染色质动力学以及G9a在小鼠早期发育过程中基因调控和增强子沉默中的作用。
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Chronic liver inflammation modifies DNA methylation at the precancerous stage of murine hepatocarcinogenesis.慢性肝脏炎症在小鼠肝癌发生的癌前阶段会改变DNA甲基化。
Oncotarget. 2015 May 10;6(13):11047-60. doi: 10.18632/oncotarget.3567.
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Epigenetic memory of the first cell fate decision prevents complete ES cell reprogramming into trophoblast.首次细胞命运决定的表观遗传记忆可阻止胚胎干细胞完全重编程为滋养层细胞。
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