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本文引用的文献

1
Identification of novel imprinted differentially methylated regions by global analysis of human-parthenogenetic-induced pluripotent stem cells.通过对人类孤雌激活诱导多能干细胞的全基因组分析鉴定新型印迹差异甲基化区域。
Stem Cell Reports. 2013 Jun 4;1(1):79-89. doi: 10.1016/j.stemcr.2013.03.005. eCollection 2013.
2
Deterministic direct reprogramming of somatic cells to pluripotency.体细胞确定性直接重编程为多能性。
Nature. 2013 Oct 3;502(7469):65-70. doi: 10.1038/nature12587. Epub 2013 Sep 18.
3
Global epigenomic reconfiguration during mammalian brain development.哺乳动物大脑发育过程中的全基因组表观遗传重编程。
Science. 2013 Aug 9;341(6146):1237905. doi: 10.1126/science.1237905. Epub 2013 Jul 4.
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Human embryonic stem cells derived by somatic cell nuclear transfer.体细胞核移植技术衍生的人类胚胎干细胞。
Cell. 2013 Jun 6;153(6):1228-38. doi: 10.1016/j.cell.2013.05.006. Epub 2013 May 15.
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Epigenomic analysis of multilineage differentiation of human embryonic stem cells.人类胚胎干细胞多能性分化的表观基因组分析。
Cell. 2013 May 23;153(5):1134-48. doi: 10.1016/j.cell.2013.04.022. Epub 2013 May 9.
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Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array.额外的注释增强了 Illumina Infinium HumanMethylation450 BeadChip 阵列进行生物相关分析的潜力。
Epigenetics Chromatin. 2013 Mar 3;6(1):4. doi: 10.1186/1756-8935-6-4.
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Estimation of false discovery rate using sequential permutation p-values.使用序贯置换p值估计错误发现率。
Biometrics. 2013 Mar;69(1):1-7. doi: 10.1111/j.1541-0420.2012.01825.x. Epub 2013 Feb 4.
8
Analysis of protein-coding mutations in hiPSCs and their possible role during somatic cell reprogramming.分析 hiPSCs 中的蛋白编码突变及其在体细胞重编程过程中的可能作用。
Nat Commun. 2013;4:1382. doi: 10.1038/ncomms2381.
9
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells.XACT,一种长链非编码转录本,覆盖人类多能干细胞中的活性 X 染色体。
Nat Genet. 2013 Mar;45(3):239-41. doi: 10.1038/ng.2530. Epub 2013 Jan 20.
10
'Leveling' the playing field for analyses of single-base resolution DNA methylomes.为单碱基分辨率DNA甲基化组分析“平整”竞争环境。
Trends Genet. 2012 Dec;28(12):583-5. doi: 10.1016/j.tig.2012.10.012. Epub 2012 Nov 3.

人多能细胞因重编程机制而出现的异常。

Abnormalities in human pluripotent cells due to reprogramming mechanisms.

机构信息

1] Center for Embryonic Cell and Gene Therapy, Oregon Health & Science University, 3303 Southwest Bond Avenue, Portland, Oregon 97239, USA [2] Division of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Oregon Health & Science University, 505 Northwest 185th Avenue, Beaverton, Oregon 97006, USA [3].

1] Department of Reproductive Medicine, University of California, San Diego, Sanford Consortium for Regenerative Medicine, 2880 Torrey Pines Scenic Drive, La Jolla, California 92037, USA [2].

出版信息

Nature. 2014 Jul 10;511(7508):177-83. doi: 10.1038/nature13551. Epub 2014 Jul 2.

DOI:10.1038/nature13551
PMID:25008523
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4898064/
Abstract

Human pluripotent stem cells hold potential for regenerative medicine, but available cell types have significant limitations. Although embryonic stem cells (ES cells) from in vitro fertilized embryos (IVF ES cells) represent the 'gold standard', they are allogeneic to patients. Autologous induced pluripotent stem cells (iPS cells) are prone to epigenetic and transcriptional aberrations. To determine whether such abnormalities are intrinsic to somatic cell reprogramming or secondary to the reprogramming method, genetically matched sets of human IVF ES cells, iPS cells and nuclear transfer ES cells (NT ES cells) derived by somatic cell nuclear transfer (SCNT) were subjected to genome-wide analyses. Both NT ES cells and iPS cells derived from the same somatic cells contained comparable numbers of de novo copy number variations. In contrast, DNA methylation and transcriptome profiles of NT ES cells corresponded closely to those of IVF ES cells, whereas iPS cells differed and retained residual DNA methylation patterns typical of parental somatic cells. Thus, human somatic cells can be faithfully reprogrammed to pluripotency by SCNT and are therefore ideal for cell replacement therapies.

摘要

人类多能干细胞在再生医学方面具有潜力,但现有的细胞类型存在显著的局限性。尽管体外受精胚胎(IVF ES 细胞)来源的胚胎干细胞(ES 细胞)代表了“金标准”,但它们与患者存在异体性。自体诱导多能干细胞(iPS 细胞)易发生表观遗传和转录异常。为了确定这些异常是体细胞重编程的固有特性还是重编程方法的次要因素,对通过体细胞核移植(SCNT)获得的遗传匹配的一组人类 IVF ES 细胞、iPS 细胞和核移植 ES 细胞(NT ES 细胞)进行了全基因组分析。源自同一体细胞的 NT ES 细胞和 iPS 细胞都含有数量相当的从头拷贝数变异。相比之下,NT ES 细胞的 DNA 甲基化和转录组谱与 IVF ES 细胞非常相似,而 iPS 细胞则不同,并保留了典型的亲本体细胞的残留 DNA 甲基化模式。因此,人类体细胞可以通过 SCNT 被忠实地重编程为多能性,因此非常适合细胞替代疗法。