Calandrini Vania, Nguyen Trung Hai, Arnesano Fabio, Galliani Angela, Ippoliti Emiliano, Carloni Paolo, Natile Giovanni
Computational Biophysics, German Research School for Simulation Sciences, 52425 Jülich (Germany); Computational Biomedicine, Institute for Advanced Simulation IAS-5, Forschungszentrum Jülich, 52425 (Germany); Computational Biomedicine, Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich, 52425 Jülich (Germany).
Chemistry. 2014 Sep 8;20(37):11719-25. doi: 10.1002/chem.201402834. Epub 2014 Aug 8.
Cisplatin is one of the most used anticancer drugs. Its cellular influx and delivery to target DNA may involve the copper chaperone Atox1 protein. Although the mode of binding is established by NMR spectroscopy measurements in solution-the Pt atom binds to Cys12 and Cys15 while retaining the two ammine groups-the structural determinants of the adduct are not known. Here a structural model by hybrid Car-Parrinello density functional theory-based QM/MM simulations is provided. The platinated site minimally modifies the fold of the protein. The calculated NMR and CD spectral properties are fully consistent with the experimental data. Our in silico/in vitro approach provides, together with previous studies, an unprecedented view into the structural biology of cisplatin-protein adducts.
顺铂是最常用的抗癌药物之一。它进入细胞并传递至靶DNA可能涉及铜伴侣蛋白Atox1。尽管结合模式已通过溶液中的核磁共振光谱测量确定——铂原子与半胱氨酸12和半胱氨酸15结合,同时保留两个氨基团——但加合物的结构决定因素尚不清楚。本文提供了一个基于混合Car-Parrinello密度泛函理论的QM/MM模拟的结构模型。铂化位点对蛋白质的折叠影响最小。计算得到的核磁共振和圆二色光谱性质与实验数据完全一致。我们的计算机模拟/体外研究方法与之前的研究一起,为顺铂-蛋白质加合物的结构生物学提供了前所未有的见解。