Werbeck Nicolas D, Hansen D Flemming
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, United Kingdom.
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, United Kingdom.
J Magn Reson. 2014 Sep;246:136-48. doi: 10.1016/j.jmr.2014.06.010. Epub 2014 Jun 28.
The equations that describe the time-evolution of transverse and longitudinal (15)N magnetisations in tetrahedral ammonium ions, (15)NH4(+), are derived from the Bloch-Wangsness-Redfield density operator relaxation theory. It is assumed that the relaxation of the spin-states is dominated by (1) the intra-molecular (15)N-(1)H and (1)H-(1)H dipole-dipole interactions and (2) interactions of the ammonium protons with remote spins, which also include the contribution to the relaxations that arise from the exchange of the ammonium protons with the bulk solvent. The dipole-dipole cross-correlated relaxation mechanisms between each of the (15)N-(1)H and (1)H-(1)H interactions are explicitly taken into account in the derivations. An application to (15)N-ammonium bound to a 41kDa domain of the protein DnaK is presented, where a comparison between experiments and simulations show that the ammonium ion rotates rapidly within its binding site with a local correlation time shorter than approximately 1ns. The theoretical framework provided here forms the basis for further investigations of dynamics of AX4 spin systems, with ammonium ions in solution and bound to proteins of particular interest.
描述四面体铵离子((^{15}NH_4^+))中横向和纵向((^{15}N))磁化强度随时间演化的方程,是从布洛赫 - 旺斯尼斯 - 雷德菲尔德密度算符弛豫理论推导出来的。假设自旋态的弛豫主要由以下因素主导:(1)分子内((^{15}N))-((^1H))和((^1H))-((^1H))偶极 - 偶极相互作用,以及(2)铵质子与远程自旋的相互作用,这也包括铵质子与大量溶剂交换所产生的弛豫贡献。在推导过程中明确考虑了((^{15}N))-((^1H))和((^1H))-((^1H))相互作用之间的偶极 - 偶极交叉相关弛豫机制。文中给出了与蛋白质DnaK的41kDa结构域结合的((^{15}N))-铵的应用实例,实验与模拟结果的比较表明,铵离子在其结合位点内快速旋转,局部相关时间短于约1纳秒。这里提供的理论框架为进一步研究AX4自旋系统的动力学奠定了基础,该系统包括溶液中的铵离子以及与特定感兴趣蛋白质结合的铵离子。