Cardoso Daniely V V, Cunha Leonardo A, Spada Rene F K, Ferrão Luiz F A, Roberto-Neto Orlando, Machado Francisco B C
Departamento de Química, Instituto Tecnológico de Aeronáutica, São José dos Campos, 12.228-900, São Paulo, Brazil.
J Mol Model. 2014 Sep;20(9):2449. doi: 10.1007/s00894-014-2449-4. Epub 2014 Sep 10.
Sulfur-containing molecules have a significant impact on atmosphere and biosphere. In this work we studied, from the point of view of electronic structure and chemical kinetics methods, the elementary reactions between a methanethiol molecule and a sulfur atom leading to hydrogen abstraction C-S bond cleavage (CH(3)SH+S; R1:→ CH(3)S+SH; R2: → CH(2)SH+SH; R3:→ CH(3)+HS(2)). The geometrical structures of the reactants, products, and saddle points for the three reaction paths were optimized using the BB1K method with the aug-cc-pV(T+d)Z basis set. The thermochemical properties were improved using single point coupled-cluster (CCSD(T)) calculations on the BB1K geometries followed by extrapolation to the complete basis set (CBS) limit. This methodology was previously applied and has given accurate values of thermochemical and kinetics properties when compared to benchmark calculations and experimental data. For each reaction, the thermal rate constants were calculated using the improved canonical variational theory (ICVT) including the zero-curvature (ICVT/ZCT) and small-curvature (ICVT/SCT) tunneling corrections. For comparison, the overall ICVT/SCT reaction rate constant at 300 K obtained with single-point CCSD(T)/CBS calculations for the CH(3)SH+S reaction is approximately 1400 times lower than the isovalent CH(3)SH+O reaction, obtained with CVT/SCT. The reaction path involving the hydrogen abstraction from the thiol group is the most important reactive path in all temperatures.
含硫分子对大气和生物圈有重大影响。在这项工作中,我们从电子结构和化学动力学方法的角度研究了甲硫醇分子与硫原子之间导致氢提取和C-S键断裂的基元反应(CH(3)SH + S;R1:→ CH(3)S + SH;R2:→ CH(2)SH + SH;R3:→ CH(3) + HS(2))。使用BB1K方法和aug-cc-pV(T + d)Z基组对三个反应路径的反应物、产物和鞍点的几何结构进行了优化。通过在BB1K几何结构上进行单点耦合簇(CCSD(T))计算,然后外推到完整基组(CBS)极限,改进了热化学性质。与基准计算和实验数据相比,该方法先前已被应用,并给出了准确的热化学和动力学性质值。对于每个反应,使用改进的正则变分理论(ICVT)计算热速率常数,包括零曲率(ICVT/ZCT)和小曲率(ICVT/SCT)隧道效应校正。作为比较,用单点CCSD(T)/CBS计算得到的CH(3)SH + S反应在300 K时的整体ICVT/SCT反应速率常数比用CVT/SCT得到的等价CH(3)SH + O反应低约1400倍。在所有温度下,涉及从硫醇基团提取氢的反应路径是最重要的反应路径。