Chandraboss V L, Karthikeyan B, Senthilvelan S
Department of Chemistry, Annamalai University, Annamalai Nagar 608 002, Tamilnadu, India.
Phys Chem Chem Phys. 2014 Nov 14;16(42):23461-75. doi: 10.1039/c4cp03274h.
Theoretical investigation of guanine, DNA base adsorption on the ZnO model clusters, viz., Zn2O2, Zn3O3, Zn4O4 ring (R) and Zn4O4 wurtzite (W) in terms of geometry, binding site, binding energy (EB), energy gap (Eg), electronic and spectral properties were studied by a density functional theory (DFT) method. The guanine adsorption on the ZnO (G-ZnO) clusters is modeled by the B3LYP/LanL2DZ method. The calculated binding energy (EB) and energy gap (Eg) of the guanine molecule are highly dependent on the nature of the cluster size and vary with the size of the clusters. Physisorption proceeded via formation of the NZn bond between guanine and the active Zn(2+) site on ZnO. The HOMO-LUMO energies show that charge transfer occurs in the G-ZnO clusters, from ZnO to guanine to better understand the interaction. The Mulliken charges are computed. The electronic properties of ZnO and G-ZnO clusters were compared with different basis sets (B3LYP/6-31G, B3LYP/6-311G, MP2/6-31G and MP2/LanL2DZ). Experimental information like microscopic and spectroscopic evidence is also included for understanding the guanine-ZnO interactions. The G-ZnO composite was prepared by a precipitation method and characterized by SEM with EDX, FT-IR and FT-RAMAN analysis. The interaction of guanine with ZnO nanoparticles was observed by UV-vis spectroscopy. The experimental results are compared with the DFT results in the light of these new insights.
采用密度泛函理论(DFT)方法,从几何结构、结合位点、结合能(EB)、能隙(Eg)、电子和光谱性质等方面,对鸟嘌呤、DNA碱基在ZnO模型团簇(即Zn2O2、Zn3O3、Zn4O4环(R)和Zn4O4纤锌矿(W))上的吸附进行了理论研究。鸟嘌呤在ZnO(G-ZnO)团簇上的吸附采用B3LYP/LanL2DZ方法进行建模。计算得到的鸟嘌呤分子的结合能(EB)和能隙(Eg)高度依赖于团簇尺寸的性质,并随团簇尺寸而变化。物理吸附通过鸟嘌呤与ZnO上活性Zn(2+)位点之间形成NZn键进行。HOMO-LUMO能量表明,在G-ZnO团簇中发生了从ZnO到鸟嘌呤的电荷转移,以便更好地理解相互作用。计算了Mulliken电荷。将ZnO和G-ZnO团簇的电子性质与不同基组(B3LYP/6-31G、B3LYP/6-311G、MP2/6-31G和MP2/LanL2DZ)进行了比较。还包括微观和光谱证据等实验信息,以了解鸟嘌呤与ZnO的相互作用。通过沉淀法制备了G-ZnO复合材料,并通过扫描电子显微镜(SEM)结合能谱(EDX)、傅里叶变换红外光谱(FT-IR)和傅里叶变换拉曼光谱(FT-RAMAN)分析对其进行了表征。通过紫外可见光谱观察了鸟嘌呤与ZnO纳米颗粒的相互作用。根据这些新的见解,将实验结果与DFT结果进行了比较。