Wei Chenyu, Pohorille Andrew
NASA Ames Research Center , Mail Stop 229-1, Moffett Field, California 94035, United States.
J Phys Chem B. 2014 Nov 13;118(45):12919-26. doi: 10.1021/jp508163e. Epub 2014 Oct 30.
Flip-flop of protonated oleic acid molecules dissolved at two different concentrations in membranes made of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine is studied with the aid of molecular dynamics simulations at a time scale of several microseconds. Direct, single-molecule flip-flop events are observed at this time scale, and the flip-flop rate is estimated at 0.2-0.3 μs(-1). As oleic acid molecules move toward the center of the bilayer during flip-flop, they undergo gradual, correlated translational, and rotational motion. Rare, double-flipping events of two hydrogen-bonded oleic acid molecules are also observed. A two-dimensional free energy surface is obtained for the translational and rotational degree of freedom of the oleic acid molecule, and the minimum energy path on this surface is determined. A barrier to flip-flop of ~4.2 kcal/mol is found at the center of the bilayer. A two-dimensional diffusion model is found to provide a good description of the flip-flop process. The fast flip-flop rate lends support to the proposal that fatty acids permeate membranes without assistance of transport proteins. It also suggests that desorption rather than flip-flop is the rate-limiting step in fatty acid transport through membranes. The relation of flip-flop rates to the evolution of ancestral cellular systems is discussed.
借助分子动力学模拟,在数微秒的时间尺度上研究了溶解于由1 - 棕榈酰 - 2 - 油酰 - sn - 甘油 - 3 - 磷酸胆碱制成的膜中、处于两种不同浓度的质子化油酸分子的翻转情况。在此时间尺度上观察到了直接的单分子翻转事件,翻转速率估计为0.2 - 0.3 μs⁻¹。当油酸分子在翻转过程中向双层膜中心移动时,它们会经历逐渐的、相关的平移和旋转运动。还观察到了两个氢键连接的油酸分子的罕见双翻转事件。获得了油酸分子平移和旋转自由度的二维自由能表面,并确定了该表面上的最小能量路径。在双层膜中心发现翻转的势垒约为4.2千卡/摩尔。发现二维扩散模型能很好地描述翻转过程。快速的翻转速率支持了脂肪酸在无转运蛋白协助的情况下渗透膜的提议。这也表明解吸而非翻转是脂肪酸通过膜运输的限速步骤。讨论了翻转速率与原始细胞系统进化的关系。