Lamy J-B, Séroussi B, Griffon N, Kerdelhué G, Jaulent M-C, Bouaud J
Jean-Baptiste Lamy, LIMICS - Bureau 149, Université Paris 13, 74 rue Marcel Cachin, 93017 Bobigny, France, E-mail:
Methods Inf Med. 2015;54(2):135-44. doi: 10.3414/ME14-01-0031. Epub 2014 Nov 14.
Each year, the International Medical Informatics Association Yearbook recognizes significant scientific papers, labelled as "best papers", published the previous year in the subfields of biomedical informatics that correspond to the different section topics of the journal. For each section, about fifteen pre-selected "candidate" best papers are externally peer-reviewed to select the actual best papers. Although based on the available literature, little is known about the pre-selection process.
To move toward an explicit formalization of the candidate best papers selection process to reduce variability in the literature search across sections and over years.
A methodological framework is proposed to build for each section topic specific queries tailored to PubMed and Web of Science citation databases. The two sets of returned papers are merged and reviewed by two independent section editors and citations are tagged as "discarded", "pending", and "kept". A protocolized consolidation step is then jointly conducted to resolve conflicts. A bibliographic software tool, BibReview, was developed to support the whole process.
The proposed search strategy was fully applied to the Decision Support section of the 2013 edition of the Yearbook. For this section, 1124 references were returned (689 PubMed-specific, 254 WoS-specific, 181 common to both databases) among which the 15 candidate best papers were selected.
The search strategy for determining candidate best papers for an IMIA Yearbook's section is now explicitly specified and allows for reproducibility. However, some aspects of the whole process remain reviewer-dependent, mostly because there is no characterization of a "best paper".
每年,国际医学信息学协会年鉴都会认可上一年在生物医学信息学子领域发表的被标记为“最佳论文”的重要科学论文,这些子领域与该期刊的不同章节主题相对应。对于每个章节,大约15篇预先选定的“候选”最佳论文会接受外部同行评审,以选出实际的最佳论文。尽管基于现有文献,但对于预选过程知之甚少。
朝着明确形式化候选最佳论文的选择过程迈进,以减少各章节和多年来文献检索的变异性。
提出了一个方法框架,为每个章节主题构建针对PubMed和科学网引文数据库量身定制的特定查询。两组返回的论文由两位独立的章节编辑合并并评审,引文被标记为“丢弃”、“待定”和“保留”。然后共同进行一个标准化的整合步骤以解决冲突。开发了一个文献软件工具BibReview来支持整个过程。
所提出的搜索策略被完全应用于2013年年鉴的决策支持章节。对于该章节,返回了1124条参考文献(689条特定于PubMed,254条特定于科学网,181条为两个数据库共有),从中选出了15篇候选最佳论文。
现在已经明确规定了确定国际医学信息学协会年鉴某一章节候选最佳论文的搜索策略,并具有可重复性。然而,整个过程的某些方面仍然依赖评审人员,主要是因为没有对“最佳论文”进行特征描述。