Abdullaev S A, Fomenko L A, Kuznetsova E A, Gaziev A I
Radiats Biol Radioecol. 2013 Jul-Aug;53(4):380-8.
Transfer of mtDNA in the nuclear genome is usually regarded as a continued and dynamic process of forming numt-pseudogenes or numt-insertions. They can be regarded not only as a neutral polymorphism, but may be involved in oncogenesis, aging and genetic diseases. Experimental identification of numt-insertions arising de novo is limited due to the presence of numerous homology mtDNA constitutively existing in the nuclear genomes of eukaryotes. It is known that the chick nuclear DNA (nDNA) constitutively contains 12 numt-pseudogenes. We attempted to experimentally detect the formation of numt-insertions de novo in the nDNA of chick embryos (Gallus gallus) from the eggs exposed to X-rays. Free mtDNAs were removed from preparations of nDNA of liver embryos through double gel electrophoresis. Numt-inserts in nDNA of control and survival embryos (from irradiated eggs) were revealed by PCR using 11 pairs of primers flanking the region of mtDNA of about 300-400 bp. PCR analysis with nDNA of control group showed no presence of homology mtDNA amplified with selected primers. PCR assays of nDNA of eight embryos from irradiated eggs showed that nDNA of two embryos contained new sites of mtDNA. PCR amplification of 3 loci of mtDNA is stably detected in nDNA from one embryo and 4 loci of mtDNA in nDNA from another embryo. Sequencing of PCR amplicons synthesized on templates of these nDNA showed that their sequences are identical to mtDNA and accurately cover the sites of several genes and the site of mtDNA D-loop. Thus, the experimental results indicate that ionizing radiation can induce integration of mtDNA fragments in the nuclear genome, apparently, through the mechanism of nonhomologous end-joining repair of double-strand breaks of nDNA.
线粒体DNA(mtDNA)向核基因组的转移通常被视为一个持续且动态的过程,即形成核线粒体假基因(numt - pseudogenes)或核线粒体插入片段(numt - insertions)。它们不仅可被视为一种中性多态性,还可能参与肿瘤发生、衰老及遗传疾病。由于真核生物核基因组中本就存在大量同源线粒体DNA,从头产生的核线粒体插入片段的实验鉴定受到限制。已知鸡的核DNA(nDNA)中本就含有12个核线粒体假基因。我们试图通过实验检测暴露于X射线的鸡蛋孵化出的鸡胚胎(原鸡)的nDNA中从头产生的核线粒体插入片段的形成。通过双重凝胶电泳从肝脏胚胎的nDNA制剂中去除游离的mtDNA。使用11对侧翼约300 - 400 bp线粒体DNA区域的引物,通过聚合酶链反应(PCR)揭示对照胚胎和存活胚胎(来自受辐照鸡蛋)的nDNA中的核线粒体插入片段。对照组nDNA的PCR分析表明,用选定引物扩增不出同源线粒体DNA。对来自受辐照鸡蛋的8个胚胎的nDNA进行PCR检测,结果显示其中2个胚胎的nDNA含有新的线粒体DNA位点。在一个胚胎的nDNA中稳定检测到线粒体DNA 3个位点的PCR扩增,在另一个胚胎的nDNA中检测到4个位点的线粒体DNA扩增。对以这些nDNA为模板合成的PCR扩增子进行测序,结果表明其序列与线粒体DNA相同,且准确覆盖了几个基因的位点以及线粒体DNA D环的位点。因此,实验结果表明电离辐射可通过nDNA双链断裂的非同源末端连接修复机制诱导线粒体DNA片段整合到核基因组中。