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来自产氢嗜热羧菌的HydG晶体结构:一种三功能[FeFe]氢化酶成熟酶

Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase.

作者信息

Nicolet Yvain, Pagnier Adrien, Zeppieri Laura, Martin Lydie, Amara Patricia, Fontecilla-Camps Juan C

机构信息

Metalloproteins Unit, Institut de Biologie Structurale, UMR5075, CEA, CNRS, Université Grenoble Alpes, 71, Avenue des Martyrs, CS 10090, 38044 Grenoble cedex 9 (France).

出版信息

Chembiochem. 2015 Feb 9;16(3):397-402. doi: 10.1002/cbic.201402661. Epub 2014 Dec 10.

Abstract

The structure of the radical S-adenosyl-L-methionine (SAM) [FeFe]-hydrogenase maturase HydG involved in CN(-) /CO synthesis is characterized by two internal tunnels connecting its tyrosine-binding pocket with the external medium and the C-terminal Fe4 S4 cluster-containing region. A comparison with a tryptophan-bound NosL structure suggests that substrate binding causes the closing of the first tunnel and, along with mutagenesis studies, that tyrosine binds to HydG with its amino group well positioned for H-abstraction by SAM. In this orientation the dehydroglycine (DHG) fragment caused by tyrosine Cα-Cβ bond scission can readily migrate through the second tunnel towards the C-terminal domain where both CN(-) and CO are synthesized. Our HydG structure appears to be in a relaxed state with its C-terminal cluster CysX2 CysX22 Cys motif exposed to solvent. A rotation of this domain coupled to Fe4 S4 cluster assembly would bury its putatively reactive unique Fe ion thereby allowing it to interact with DHG.

摘要

参与氰离子/一氧化碳合成的自由基S-腺苷-L-甲硫氨酸(SAM)[FeFe]-氢化酶成熟酶HydG的结构特点是有两条内部通道,将其酪氨酸结合口袋与外部介质以及含C端Fe4S4簇的区域相连。与结合色氨酸的NosL结构进行比较表明,底物结合会导致第一条通道关闭,并且结合诱变研究可知,酪氨酸以其氨基与HydG结合,该位置有利于SAM进行氢提取。在这种取向中,由酪氨酸Cα-Cβ键断裂产生的脱氢甘氨酸(DHG)片段能够很容易地通过第二条通道向C端结构域迁移,在该结构域中会合成氰离子和一氧化碳。我们的HydG结构似乎处于一种松弛状态,其C端簇CysX2CysX22Cys基序暴露于溶剂中。该结构域的旋转与Fe4S4簇组装相结合,会掩埋其假定具有反应活性的独特铁离子,从而使其能够与DHG相互作用。

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