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新一代测序技术在早发性神经肌肉疾病基因诊断中的应用

Utility of next generation sequencing in genetic diagnosis of early onset neuromuscular disorders.

作者信息

Chae Jong Hee, Vasta Valeria, Cho Anna, Lim Byung Chan, Zhang Qing, Eun So Hee, Hahn Si Houn

机构信息

Division of Pediatric Neurology, Department of Pediatrics, Seoul National University College of Medicine, Seoul, Korea.

Seattle Children's Research Institute, Seattle, Washington, USA.

出版信息

J Med Genet. 2015 Mar;52(3):208-16. doi: 10.1136/jmedgenet-2014-102819. Epub 2015 Jan 29.

Abstract

BACKGROUND

Neuromuscular disorders are a clinically, pathologically, and genetically heterogeneous group. Even for the experienced clinician, an accurate diagnosis is often challenging due to the complexity of these disorders. Here, we investigated the utility of next generation sequencing (NGS) in early diagnostic algorithms to improve the diagnosis for patients currently lacking precise molecular characterisation, particularly for hereditary myopathies.

METHODS

43 patients presenting with early onset neuromuscular disorders from unknown genetic origin were tested by NGS for 579 nuclear genes associated with myopathy.

RESULTS

In 21 of the 43 patients, we identified the definite genetic causes (48.8%). Additionally, likely pathogenic variants were identified in seven cases and variants of uncertain significance (VUS) were suspected in four cases. In total, 19 novel and 15 known pathogenic variants in 17 genes were identified in 32 patients. Collagen VI related myopathy was the most prevalent type in our cohort. The utility of NGS was highlighted in three cases with congenital myasthenia syndrome, as early diagnosis is important for effective treatment.

CONCLUSIONS

A targeted NGS can offer cost effective, safe and fairly rapid turnaround time, which can improve quality of care for patients with early onset myopathies and muscular dystrophies; in particular, collagen VI related myopathy and congenital myasthenia syndromes. Nevertheless, a substantial number of patients remained without molecular diagnosis in our cohort. This may be due to the intrinsic limitation of detection for some types of mutations by NGS or to the fact that other causative genes for neuromuscular disorders are yet to be identified.

摘要

背景

神经肌肉疾病是一组临床、病理和基因层面均具有异质性的疾病。即便对于经验丰富的临床医生而言,由于这些疾病的复杂性,准确诊断往往颇具挑战。在此,我们研究了二代测序(NGS)在早期诊断算法中的效用,以改善目前缺乏精确分子特征的患者的诊断情况,尤其是遗传性肌病患者。

方法

对43例病因不明的早发性神经肌肉疾病患者进行了NGS检测,检测与肌病相关的579个核基因。

结果

在43例患者中的21例中,我们确定了明确的遗传病因(48.8%)。此外,在7例中鉴定出可能的致病变异,在4例中怀疑有意义未明的变异(VUS)。在32例患者中共鉴定出17个基因中的19个新的和15个已知的致病变异。胶原蛋白VI相关肌病是我们队列中最常见的类型。在3例先天性肌无力综合征病例中,NGS的效用得到了凸显,因为早期诊断对有效治疗很重要。

结论

靶向NGS可以提供具有成本效益、安全且周转时间相当快的检测,这可以改善早发性肌病和肌营养不良患者的护理质量;特别是胶原蛋白VI相关肌病和先天性肌无力综合征。然而,在我们的队列中仍有相当数量的患者未得到分子诊断。这可能是由于NGS对某些类型突变的检测存在固有局限性,或者是由于神经肌肉疾病的其他致病基因尚未被鉴定出来。

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