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模拟相互作用细胞群体的运动:一种矩动力学方法。

Modelling the movement of interacting cell populations: a moment dynamics approach.

作者信息

Johnston Stuart T, Simpson Matthew J, Baker Ruth E

机构信息

School of Mathematical Sciences, Queensland University of Technology (QUT), Brisbane, Australia; Institute of Health and Biomedical Innovation, QUT, Brisbane, Australia.

School of Mathematical Sciences, Queensland University of Technology (QUT), Brisbane, Australia; Institute of Health and Biomedical Innovation, QUT, Brisbane, Australia.

出版信息

J Theor Biol. 2015 Apr 7;370:81-92. doi: 10.1016/j.jtbi.2015.01.025. Epub 2015 Jan 30.

Abstract

Mathematical models describing the movement of multiple interacting subpopulations are relevant to many biological and ecological processes. Standard mean-field partial differential equation descriptions of these processes suffer from the limitation that they implicitly neglect to incorporate the impact of spatial correlations and clustering. To overcome this, we derive a moment dynamics description of a discrete stochastic process which describes the spreading of distinct interacting subpopulations. In particular, we motivate our model by mimicking the geometry of two typical cell biology experiments. Comparing the performance of the moment dynamics model with a traditional mean-field model confirms that the moment dynamics approach always outperforms the traditional mean-field approach. To provide more general insight we summarise the performance of the moment dynamics model and the traditional mean-field model over a wide range of parameter regimes. These results help distinguish between those situations where spatial correlation effects are sufficiently strong, such that a moment dynamics model is required, from other situations where spatial correlation effects are sufficiently weak, such that a traditional mean-field model is adequate.

摘要

描述多个相互作用亚群运动的数学模型与许多生物和生态过程相关。这些过程的标准平均场偏微分方程描述存在局限性,即它们隐含地忽略了空间相关性和聚类的影响。为克服这一问题,我们推导了一个离散随机过程的矩动力学描述,该过程描述了不同相互作用亚群的扩散。特别地,我们通过模拟两个典型细胞生物学实验的几何结构来构建我们的模型。将矩动力学模型与传统平均场模型的性能进行比较,证实了矩动力学方法总是优于传统平均场方法。为提供更全面的见解,我们总结了矩动力学模型和传统平均场模型在广泛参数范围内的性能。这些结果有助于区分空间相关效应足够强从而需要矩动力学模型的情况,与空间相关效应足够弱从而传统平均场模型就足够的其他情况。

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