Biswas Rupam, Dutta Anirudha, Dutta Debajyoti, Hazra Ditipriya, Banerjee Deb Ranjan, Basak Amit, Das Amit Kumar
Department of Biotechnology, Indian Institute of Technology, Kharagpur, Kharagpur 721302, India.
Department of Chemistry, Indian Institute of Technology, Kharagpur, Kharagpur 721302, India.
Biochem Biophys Res Commun. 2015 Mar 6;458(2):369-74. doi: 10.1016/j.bbrc.2015.01.119. Epub 2015 Feb 3.
Fatty acid biosynthesis type II in mycobacteria delivers the fatty acids required for mycolic acid synthesis. The pathway employs a unique maoC like β-hydroxyacyl-ACP dehydratase HadAB or HadBC heterodimer in the third step of the elongation cycle. Here we report the crystal structure of the HadAB complex determined using a Pb-SIRAS method. Crystal structure aided with enzymatic study establishes the roles of HadA as a scaffolding component and HadB as a catalytic component together indispensable for the activity. The detailed structural analysis of HadAB in combination with MD simulation endorses the spatial orientation of the central hot-dog helix and the dynamic nature of its associated loop in regulation of substrate specificities in dehydratase/hydratase family enzymes.
分枝杆菌中的II型脂肪酸生物合成提供了合成分枝菌酸所需的脂肪酸。该途径在延伸循环的第三步中使用一种独特的maoC样β-羟基酰基-ACP脱水酶HadAB或HadBC异二聚体。在此,我们报告了使用铅单波长反常散射法(Pb-SIRAS)测定的HadAB复合物的晶体结构。结合酶学研究的晶体结构确定了HadA作为支架成分和HadB作为催化成分的作用,二者共同对于活性是不可或缺的。对HadAB的详细结构分析结合分子动力学模拟,证实了中央热狗螺旋的空间取向及其相关环在脱水酶/水合酶家族酶底物特异性调节中的动态性质。