Appleby Peter A, Shabir Saqib, Southgate Jennifer, Walker Dawn
Department of Computer Science/INSIGNEO Institute for In Silico Medicine, University of Sheffield, Sheffield, UK.
Jack Birch Unit for Molecular Carcinogenesis, Department of Biology, University of York, York, UK.
J R Soc Interface. 2015 Apr 6;12(105). doi: 10.1098/rsif.2014.1403.
Epithelial tissue structure is the emergent outcome of the interactions between large numbers of individual cells. Experimental cell biology offers an important tool to unravel these complex interactions, but current methods of analysis tend to be limited to mean field approaches or representation by selected subsets of cells. This may result in bias towards cells that respond in a particular way and/or neglect local, context-specific cell responses. Here, an automated algorithm was applied to examine in detail the individual calcium transients evoked in genetically homogeneous, but asynchronous populations of cultured non-immortalized normal human urothelial cells when subjected to either the global application of an external agonist or a localized scratch wound. The recorded calcium transients were classified automatically according to a set of defined metrics and distinct sub-populations of cells that responded in qualitatively different ways were observed. The nature of this variability in the homogeneous cell population was apportioned to two sources: intrinsic variation in individual cell responses and extrinsic variability due to context-specific factors of the environment, such as spatial heterogeneity. Statistically significant variation in the features of the calcium transients evoked by scratch wounding according to proximity to the wound edge was identified. The manifestation of distinct sub-populations of cells is considered central to the coordination of population-level response resulting in wound closure.
上皮组织结构是大量单个细胞之间相互作用的涌现结果。实验细胞生物学为揭示这些复杂相互作用提供了重要工具,但目前的分析方法往往局限于平均场方法或由选定的细胞亚群进行表征。这可能导致偏向以特定方式做出反应的细胞和/或忽视局部的、特定环境下的细胞反应。在此,应用一种自动化算法详细研究了在培养的非永生化正常人尿道上皮细胞的基因同质但异步群体中,当施加外部激动剂的全局应用或局部划痕伤口时所诱发的单个钙瞬变。根据一组定义的指标自动对记录的钙瞬变进行分类,并观察到以定性不同方式做出反应的不同细胞亚群。这种同质细胞群体中变异性的本质归因于两个来源:单个细胞反应的内在变异和由于环境的特定背景因素(如空间异质性)导致的外在变异性。根据与伤口边缘的接近程度,确定了划痕伤口诱发的钙瞬变特征的统计学显著差异。细胞不同亚群的表现被认为是导致伤口闭合的群体水平反应协调的核心。