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Structural Basis of MeCP2 Distribution on Non-CpG Methylated and Hydroxymethylated DNA.MeCP2在非CpG甲基化和羟甲基化DNA上分布的结构基础
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本文引用的文献

1
Disruption of DNA-methylation-dependent long gene repression in Rett syndrome.雷特综合征中DNA甲基化依赖性长基因抑制的破坏。
Nature. 2015 Jun 4;522(7554):89-93. doi: 10.1038/nature14319. Epub 2015 Mar 11.
2
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.对 DNA 甲基转移酶的基因组分析揭示了 DNMT3B 在基因甲基化中的作用。
Nature. 2015 Apr 9;520(7546):243-7. doi: 10.1038/nature14176. Epub 2015 Jan 21.
3
5-Hydroxymethylcytosine is a predominantly stable DNA modification.5-羟甲基胞嘧啶是一种主要稳定的DNA修饰。
Nat Chem. 2014 Dec;6(12):1049-55. doi: 10.1038/nchem.2064. Epub 2014 Sep 21.
4
Unusual characteristics of the DNA binding domain of epigenetic regulatory protein MeCP2 determine its binding specificity.表观遗传调节蛋白 MeCP2 的 DNA 结合域的独特特征决定了其结合特异性。
Biochemistry. 2014 Jun 3;53(21):3379-91. doi: 10.1021/bi500424z. Epub 2014 May 23.
5
Neocortical Tet3-mediated accumulation of 5-hydroxymethylcytosine promotes rapid behavioral adaptation.新皮层 Tet3 介导的 5-羟甲基胞嘧啶积累促进快速行为适应。
Proc Natl Acad Sci U S A. 2014 May 13;111(19):7120-5. doi: 10.1073/pnas.1318906111. Epub 2014 Apr 22.
6
Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.DNMT3A 基因突变导致伴有智力残疾的过度生长综合征。
Nat Genet. 2014 Apr;46(4):385-8. doi: 10.1038/ng.2917. Epub 2014 Mar 9.
7
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain.人类大脑中碱基分辨率下5-羟甲基胞嘧啶和5-甲基胞嘧啶的全基因组分析。
Genome Biol. 2014 Mar 4;15(3):R49. doi: 10.1186/gb-2014-15-3-r49.
8
Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain.成年哺乳动物大脑中非 CpG 甲基化的分布、识别和调控。
Nat Neurosci. 2014 Feb;17(2):215-22. doi: 10.1038/nn.3607. Epub 2013 Dec 22.
9
Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.TET2-DNA 复合物的晶体结构:揭示 TET 介导的 5mC 氧化。
Cell. 2013 Dec 19;155(7):1545-55. doi: 10.1016/j.cell.2013.11.020. Epub 2013 Dec 5.
10
Global transcriptional and translational repression in human-embryonic-stem-cell-derived Rett syndrome neurons.人胚胎干细胞衍生的瑞特综合征神经元中的全局转录和翻译抑制
Cell Stem Cell. 2013 Oct 3;13(4):446-58. doi: 10.1016/j.stem.2013.09.001.

解读大脑独特的DNA甲基化图谱:非CpG甲基化、羟甲基化与MeCP2。

Reading the unique DNA methylation landscape of the brain: Non-CpG methylation, hydroxymethylation, and MeCP2.

作者信息

Kinde Benyam, Gabel Harrison W, Gilbert Caitlin S, Griffith Eric C, Greenberg Michael E

机构信息

Department of Neurobiology, Harvard Medical School, Boston, MA 02115.

Department of Neurobiology, Harvard Medical School, Boston, MA 02115

出版信息

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6800-6. doi: 10.1073/pnas.1411269112. Epub 2015 Mar 4.

DOI:10.1073/pnas.1411269112
PMID:25739960
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4460470/
Abstract

DNA methylation at CpG dinucleotides is an important epigenetic regulator common to virtually all mammalian cell types, but recent evidence indicates that during early postnatal development neuronal genomes also accumulate uniquely high levels of two alternative forms of methylation, non-CpG methylation and hydroxymethylation. Here we discuss the distinct landscape of DNA methylation in neurons, how it is established, and how it might affect the binding and function of protein readers of DNA methylation. We review studies of one critical reader of DNA methylation in the brain, the Rett syndrome protein methyl CpG-binding protein 2 (MeCP2), and discuss how differential binding affinity of MeCP2 for non-CpG and hydroxymethylation may affect the function of this methyl-binding protein in the nervous system.

摘要

CpG二核苷酸处的DNA甲基化是几乎所有哺乳动物细胞类型共有的一种重要表观遗传调节因子,但最近的证据表明,在出生后早期发育过程中,神经元基因组还积累了两种独特的高水平替代甲基化形式,即非CpG甲基化和羟甲基化。在这里,我们讨论神经元中DNA甲基化的独特格局、其建立方式以及它可能如何影响DNA甲基化蛋白识别器的结合和功能。我们回顾了对大脑中一种关键的DNA甲基化识别器——雷特综合征蛋白甲基CpG结合蛋白2(MeCP2)的研究,并讨论了MeCP2对非CpG和羟甲基化的不同结合亲和力可能如何影响这种甲基结合蛋白在神经系统中的功能。