Lin Zhixiong, Bachmann Stephan J, van Gunsteren Wilfred F
Laboratory of Physical Chemistry, Swiss Federal Institute of Technology, ETH, 8093 Zürich, Switzerland.
J Chem Phys. 2015 Mar 7;142(9):094117. doi: 10.1063/1.4913955.
Two one-site polarizable urea models, COS/U and COS/U2, based on the charge-on-spring model are proposed. The models are parametrized against thermodynamic properties of urea-water mixtures in combination with the polarizable COS/G2 and COS/D2 models for liquid water, respectively, and have the same functional form of the inter-atomic interaction function and are based on the same parameter calibration procedure and type of experimental data as used to develop the GROMOS biomolecular force field. Thermodynamic, dielectric, and dynamic properties of urea-water mixtures simulated using the polarizable models are closer to experimental data than using the non-polarizable models. The COS/U and COS/U2 models may be used in biomolecular simulations of protein denaturation.
基于弹簧上电荷模型,提出了两种单位点可极化尿素模型COS/U和COS/U2。这些模型分别结合液态水的可极化COS/G2和COS/D2模型,针对尿素 - 水混合物的热力学性质进行参数化,具有相同的原子间相互作用函数功能形式,并且基于与开发GROMOS生物分子力场相同的参数校准程序和实验数据类型。使用可极化模型模拟的尿素 - 水混合物的热力学、介电和动力学性质比使用不可极化模型更接近实验数据。COS/U和COS/U2模型可用于蛋白质变性的生物分子模拟。