Xu Hu-Chao, Zhang Jun-Yi, Si Can
Zhongguo Zhong Yao Za Zhi. 2014 Oct;39(20):3922-7.
Restriction site amplification polymorphism (RSAP) markers were employed to access the genetic diversity and relationship of 120 lilyturf germplasms from different geographical origins. Sixteen RSAP primer pairs generated 326 polymorphic bands, of which 318 (97.55%) were polymorphic. The value of polymorphism information content (PIC) ranged from 0.87 to 0.95 with an average of 0.92. These results indicated there was abundant genetic diversity among samples. The results of data analysis on 20 population showed that the value of percentage of polymorphic locus (PPL), Nei's gene diversity (H) and Shannon's information index (I) were 19.94%-85.58%, 0.082 6-0.210 7, 0.120 6-0.328 1 respectively. The most abundant genetic diversity was found in the O. japonicus population from Zhejiang and the least in the Liriope minor population. The genetic distance among 20 population was 0.024 6-0.286 8, of which the minimum genetic distance was 0.024 6 between population I and population 13 while the maximum 0.286 8 between population 5 and population 15. Coefficient of genetic differentiation among natural populations was 0.115 3 (Gst). And the gene differentiation contributed to 43.07% of the total genetic variation among populations and to 56.93% within populations. The total gene flow (Nm) was 0.660 9. UPMGA clustering analysis was basically similar to of the principle coordinate analysis (PCA). The 120 samples were classified into four major groups, which were basically corresponded with the genetic relationships based on morphological traits. The results of UPMGA and PCA were also consistent with geographical origins.
采用限制性位点扩增多态性(RSAP)标记分析了120份不同地理来源的麦冬种质资源的遗传多样性及亲缘关系。16对RSAP引物共产生326条多态性条带,其中318条(97.55%)具有多态性。多态性信息含量(PIC)值范围为0.87至0.95,平均为0.92。这些结果表明样本间存在丰富的遗传多样性。对20个居群的数据分析结果显示,多态位点百分率(PPL)、Nei基因多样性(H)和Shannon信息指数(I)分别为19.94% - 85.58%、0.082 6 - 0.210 7、0.120 6 - 0.328 1。遗传多样性最丰富的是浙江沿阶草居群,最贫乏的是矮麦冬居群。20个居群间的遗传距离为0.024 6 - 0.286 8,其中居群1和居群13之间的遗传距离最小,为0.024 6,居群5和居群15之间的遗传距离最大,为0.286 8。自然居群间的遗传分化系数(Gst)为0.115 3。基因分化对居群间总遗传变异的贡献为43.07%,对居群内的贡献为56.93%。总基因流(Nm)为0.660 9。非加权组平均法(UPMGA)聚类分析结果与主坐标分析(PCA)基本相似。120个样本被分为四大类,这与基于形态性状的亲缘关系基本一致。UPMGA和PCA的结果也与地理来源一致。