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计算分析确定垂体腺瘤中的侵袭相关基因。

Computational analysis identifies invasion-associated genes in pituitary adenomas.

作者信息

Cao Changjun, Wang Wei, Ma Chao, Jiang Pucha

机构信息

Department of Neurosurgery, Zhongnan Hospital of Wuhan University, Wuhan, Hubei 430071, P.R. China.

出版信息

Mol Med Rep. 2015 Aug;12(2):1977-82. doi: 10.3892/mmr.2015.3564. Epub 2015 Mar 27.

Abstract

Pituitary adenomas are considered to be benign tumours. However, they can infiltrate surrounding tissues, which may cause a failure of complete removal during surgical resection. Thus far, no molecular biomarkers have been identified, which are able to reliably predict the behaviour of this type of tumour. In the present study, a list of differentially expressed genes in invasive pituitary adenomas was obtained using a computational bioinformatics analysis on the DNA microarray expression profiles. The gene expression datasets of a total of 16 samples were retrieved from the National Center for Biotechnology Information Gene Expression Omnibus database. The gene set enrichment analysis was later conducted on the significantly (FDR<0.05) differentially expressed genes. A total of 194 genes were identified as differentially expressed. The pathway impact analysis revealed that cell adhesion molecules may be vital in the progression of pituitary adenoma invasion. A total of six genes, claudin 7, contactin associated protein-like 2, integrin α6, junctional adhesion molecule 3, protein tyrosine phosphatase, receptor type C and cadherin-associated protein α1 were identified as molecular biomarkers for pituitary adenoma invasion. The present study identified six novel molecular biomarkers, which may be used for diagnostic or therapeutic purposes. However, further experimental investigations are required to validate the present findings.

摘要

垂体腺瘤被认为是良性肿瘤。然而,它们可浸润周围组织,这可能导致手术切除过程中无法完全切除。迄今为止,尚未发现能够可靠预测这类肿瘤行为的分子生物标志物。在本研究中,通过对DNA微阵列表达谱进行计算生物信息学分析,获得了侵袭性垂体腺瘤中差异表达基因的列表。总共16个样本的基因表达数据集从美国国立生物技术信息中心基因表达综合数据库中检索得到。随后对显著(FDR<0.05)差异表达的基因进行基因集富集分析。共鉴定出194个差异表达基因。通路影响分析表明,细胞粘附分子可能在垂体腺瘤侵袭进展中至关重要。总共六个基因,即紧密连接蛋白7、接触蛋白相关蛋白样2、整合素α6、连接粘附分子3、蛋白酪氨酸磷酸酶受体C型和钙粘蛋白相关蛋白α1被鉴定为垂体腺瘤侵袭的分子生物标志物。本研究鉴定出六个新的分子生物标志物,可用于诊断或治疗目的。然而,需要进一步的实验研究来验证本研究结果。

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