Grube Susanne, Göttig Tatjana, Freitag Diana, Ewald Christian, Kalff Rolf, Walter Jan
Department of Neurosurgery, Section of Experimental Neurooncology, Jena University Hospital, Friedrich-Schiller-University Jena, Erlanger Allee 101, 07747, Jena, Germany,
J Neurooncol. 2015 May;123(1):35-42. doi: 10.1007/s11060-015-1772-7. Epub 2015 Apr 11.
In human glioma research, quantitative real-time reverse-transcription PCR is a frequently used tool. Considering the broad variation in the expression of candidate reference genes among tumor stages and normal brain, studies using quantitative RT-PCR require strict definition of adequate endogenous controls. This study aimed at testing a panel of nine reference genes [beta-2-microglobulin, cytochrome c-1 (CYC1), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), hydroxymethylbilane synthase, hypoxanthine guanine phosphoribosyl transferase 1, ribosomal protein L13a (RPL13A), succinate dehydrogenase, TATA-box binding protein and 14-3-3 protein zeta] to identify and validate the most suitable reference genes for expression studies in human glioma of different grades (World Health Organization grades II-IV). After analysis of the stability values calculated using geNorm, NormFinder, and BestKeeper algorithms, GAPDH, RPL13A, and CYC1 can be indicated as reference genes applicable for accurate normalization of gene expression in glioma compared with normal brain and anaplastic astrocytoma or glioblastoma alone within this experimental setting. Generally, there are no differences in expression levels and variability of candidate genes in glioma tissue compared to normal brain. But stability analyses revealed just a small number of genes suitable for normalization in each of the tumor subgroups and across these groups. Nevertheless, our data show the importance of validation of adequate reference genes prior to every study.
在人类胶质瘤研究中,定量实时逆转录PCR是一种常用工具。鉴于候选内参基因在肿瘤分期和正常脑组织中的表达存在广泛差异,使用定量RT-PCR的研究需要严格定义合适的内源性对照。本研究旨在测试一组九个内参基因[β-2-微球蛋白、细胞色素c-1(CYC1)、甘油醛-3-磷酸脱氢酶(GAPDH)、羟甲基胆色素原合酶、次黄嘌呤鸟嘌呤磷酸核糖基转移酶1、核糖体蛋白L13a(RPL13A)、琥珀酸脱氢酶、TATA盒结合蛋白和14-3-3蛋白ζ],以鉴定和验证在不同级别(世界卫生组织II-IV级)的人类胶质瘤表达研究中最合适的内参基因。在分析使用geNorm、NormFinder和BestKeeper算法计算出的稳定性值后,在本实验设置中,与正常脑组织以及单独的间变性星形细胞瘤或胶质母细胞瘤相比,GAPDH、RPL13A和CYC1可作为适用于胶质瘤基因表达准确标准化的内参基因。一般来说,与正常脑组织相比,胶质瘤组织中候选基因的表达水平和变异性没有差异。但稳定性分析表明,在每个肿瘤亚组以及这些亚组之间,只有少数基因适合用于标准化。尽管如此,我们的数据表明在每项研究之前验证合适的内参基因的重要性。