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采用多光谱和分子对接技术研究硫酸特布他林与小牛胸腺DNA的结合。

Binding studies of terbutaline sulfate to calf thymus DNA using multispectroscopic and molecular docking techniques.

作者信息

Bi Shuyun, Zhao Tingting, Wang Yu, Zhou Huifeng, Pang Bo, Gu Tingting

机构信息

College of Chemistry, Changchun Normal University, Changchun 130032, China.

College of Chemistry, Changchun Normal University, Changchun 130032, China.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2015;150:921-7. doi: 10.1016/j.saa.2015.06.042. Epub 2015 Jun 19.

Abstract

The interaction of terbutaline sulfate (TS) with calf thymus DNA (ctDNA) were investigated by fluorescence quenching, UV-vis absorption, viscosity measurements, ionic strength effect, DNA melting experiments and molecular docking. The binding constants (Ka) of TS to ctDNA were determined as 4.92×10(4), 1.26×10(4) and 1.16×10(4) L mol(-1) at 17, 27 and 37 °C, respectively. Stern-Volmer plots suggested that the quenching of fluorescence of TS by ctDNA was a static quenching. The absorption spectra of TS with ctDNA revealed a slight blue shift and hyperchromic effect. The relative viscosity ctDNA was hardly changed by TS, and melting temperature varied slightly. For the system of TS-ctDNA, the intensity of fluorescence decreased with the increase of ionic strength. Also, the Ka for TS-double stranded DNA (dsDNA) was clearly weaker than that for TS-single stranded DNA (ssDNA). All these results revealed that the binding mode of TS with ctDNA should be groove binding. The enthalpy change and entropy change suggested that van der Waals force or hydrogen bonds was a main binding force between TS and ctDNA. Furthermore, the quantum yield of TS was measured by comparing with the standard solution. Based on the Förster energy transference theory (FRET), the binding distance between the acceptor and donor was calculated. Molecular docking showed that TS was a minor groove binder of ctDNA and preferentially bound to A-T rich regions.

摘要

通过荧光猝灭、紫外可见吸收、粘度测量、离子强度效应、DNA熔解实验和分子对接等方法研究了硫酸特布他林(TS)与小牛胸腺DNA(ctDNA)的相互作用。TS与ctDNA的结合常数(Ka)在17、27和37℃时分别测定为4.92×10⁴、1.26×10⁴和1.16×10⁴ L·mol⁻¹。Stern-Volmer图表明ctDNA对TS荧光的猝灭是静态猝灭。TS与ctDNA的吸收光谱显示出轻微的蓝移和增色效应。TS对ctDNA的相对粘度几乎没有改变,熔解温度略有变化。对于TS-ctDNA体系,荧光强度随离子强度的增加而降低。此外,TS与双链DNA(dsDNA)的Ka明显弱于与单链DNA(ssDNA)的Ka。所有这些结果表明TS与ctDNA的结合模式应为沟槽结合。焓变和熵变表明范德华力或氢键是TS与ctDNA之间的主要结合力。此外,通过与标准溶液比较测量了TS的量子产率。基于Förster能量转移理论(FRET),计算了受体与供体之间的结合距离。分子对接表明TS是ctDNA的小沟结合剂,优先结合于富含A-T的区域。

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